Pre_GI: BLASTP Hits

Some Help

Query: NC_003155:5443230:5453354 Streptomyces avermitilis MA-4680, complete genome

Start: 5453354, End: 5453929, Length: 576

Host Lineage: Streptomyces avermitilis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain (ATCC 31267) was isolated and characterized in 1978 by R. Burg and colleagues from a soil sample collected in Shizuoka Prefecture, Japan. Antibiotic-producing bacterium. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This organism is a well known producer of the anti-parasitic agent avermectin which is widely used to rid livestock of worm and insect infestations and to protect large numbers of people from river blindness in sub-Saharan Africa.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013929:4807910:481216648121664812741576Streptomyces scabiei 87.22 chromosome, complete genomedeoxynucleotide triphosphate deaminase7e-106382
NC_018750:3741581:375690237569023757540639Streptomyces venezuelae ATCC 10712, complete genomeDeoxycytidine triphosphate deaminase1e-103375
NC_015953:3456535:346547134654713466046576Streptomyces sp. SirexAA-E chromosome, complete genomedeoxycytidine triphosphate deaminase2e-102371
NC_010572:4024810:403045340304534031028576Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative deoxynucleotide triphosphate deaminase4e-101366
NC_016111:3486000:349345934934593494034576Streptomyces cattleya NRRL 8057, complete genomeDeoxycytidine triphosphate deaminase2e-98358
NC_015957:196000:204465204465205079615Streptomyces violaceusniger Tu 4113 chromosome, complete genomedeoxycytidine triphosphate deaminase3e-97353
NC_013595:891897:907448907448908023576Streptosporangium roseum DSM 43021, complete genomedeoxycytidine triphosphate deaminase1e-95348
NC_013510:262888:269703269703270278576Thermomonospora curvata DSM 43183, complete genomedeoxycytidine triphosphate deaminase1e-94345
NC_014210:5370868:538555653855565386146591Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,deoxycytidine triphosphate deaminase7e-91332
NC_014666:300571:303215303215303811597Frankia sp. EuI1c chromosome, complete genomedeoxycytidine triphosphate deaminase2e-87321
NC_006087:2439252:244557224455722446177606Leifsonia xyli subsp. xyli str. CTCB07, complete genomedeoxycytidine triphosphate deaminase2e-86317
NC_010407:3174470:318186531818653182470606Clavibacter michiganensis subsp. sepedonicus chromosome, completedeoxycytidine triphosphate deaminase6e-86316
NC_002944:4254011:426877542687754269347573Mycobacterium avium subsp. paratuberculosis K-10, complete genomedeoxycytidine triphosphate deaminase2e-80297
NC_012522:5895946:591558659155865916155570Rhodococcus opacus B4, complete genomedeoxycytidine triphosphate deaminase6e-80296
NC_014814:483444:499982499982500554573Mycobacterium sp. Spyr1 chromosome, complete genomedCTP deaminase1e-78291
NC_014659:4299552:433215943321594332746588Rhodococcus equi 103S, complete genome2'-deoxycytidine 5'-triphosphate deaminase3e-78290
NC_014246:651801:655183655183655803621Mobiluncus curtisii ATCC 43063 chromosome, complete genomedeoxycytidine triphosphate deaminase6e-78289
NC_010612:681544:700534700534701106573Mycobacterium marinum M, complete genomedeoxycytidine triphosphate deaminase, Dcd7e-78289
NC_005213:202400:221768221768409281187514Nanoarchaeum equitans Kin4-M, complete genometRNA-His6e-40163
NC_005213:295994:221768221768409281187514Nanoarchaeum equitans Kin4-M, complete genometRNA-His6e-40163
NC_005213:384998:221768221768409281187514Nanoarchaeum equitans Kin4-M, complete genometRNA-His6e-40163
NC_005213:202400:283658283658284254597Nanoarchaeum equitans Kin4-M, complete genomehypothetical protein3e-39160
NC_015559:2434000:245325724532572453847591Marinomonas posidonica IVIA-Po-181 chromosome, complete genomedeoxycytidine triphosphate deaminase2e-35148
NC_012779:1286500:128843912884391289020582Edwardsiella ictaluri 93-146, complete genomedeoxycytidine triphosphate deaminase, putative2e-35148
NC_013508:1289159:129227912922791292860582Edwardsiella tarda EIB202, complete genomedeoxycytidine triphosphate deaminase2e-35148
NC_009654:1729159:173255617325561733140585Marinomonas sp. MWYL1, complete genomedeoxycytidine triphosphate deaminase2e-34145
NC_015663:4950000:501137150113715011952582Enterobacter aerogenes KCTC 2190 chromosome, complete genomedeoxycytidine triphosphate deaminase5e-34144
NC_020181:360500:362229362229362810582Enterobacter aerogenes EA1509E, complete genomeDeoxycytidine triphosphate deaminase5e-34144
NC_003551:260000:280561280561281142582Methanopyrus kandleri AV19, complete genomeDeoxycytidine deaminase2e-33141
NC_020211:1704500:170450317045031705084582Serratia marcescens WW4, complete genome2'-deoxycytidine 5'-triphosphate deaminase8e-33139
NC_008228:2295841:229701122970112297610600Pseudoalteromonas atlantica T6c, complete genomedeoxycytidine triphosphate deaminase1e-32139
NC_013421:3279499:331383833138383314419582Pectobacterium wasabiae WPP163, complete genomedeoxycytidine triphosphate deaminase3e-32137
NC_009832:1719149:171914917191491719730582Serratia proteamaculans 568, complete genomedeoxycytidine triphosphate deaminase1e-31136
NC_015061:1902251:190418919041891904770582Rahnella sp. Y9602 chromosome, complete genomedeoxycytidine triphosphate deaminase2e-31135
NC_016818:1927500:192827919282791928860582Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completedeoxycytidine triphosphate deaminase2e-31135
NC_017047:1862893:186483118648311865412582Rahnella aquatilis HX2 chromosome, complete genomedeoxycytidine triphosphate deaminase2e-31135
NC_015567:1660462:166210216621021662683582Serratia sp. AS9 chromosome, complete genomedeoxycytidine triphosphate deaminase2e-31135
NC_015566:1659288:166209016620901662671582Serratia sp. AS12 chromosome, complete genomedeoxycytidine triphosphate deaminase2e-31135
NC_007712:1601499:160448616044861605067582Sodalis glossinidius str. 'morsitans', complete genome2'-deoxycytidine 5'-triphosphate deaminase1e-31135
NC_014500:1491660:149379714937971494378582Dickeya dadantii 3937 chromosome, complete genome2'-deoxycytidine 5'-triphosphate deaminase3e-31134
NC_009800:2156091:218587621858762186457582Escherichia coli HS, complete genomedeoxycytidine triphosphate deaminase4e-31134
NC_004545:96422:112936112936113517582Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genomedeoxycytidine triphosphate deaminase7e-26116
NC_008228:372520:381964381964382518555Pseudoalteromonas atlantica T6c, complete genomedeoxycytidine triphosphate deaminase2e-24112
NC_009635:1444461:146760014676001468205606Methanococcus aeolicus Nankai-3 chromosome, complete genomedeoxycytidine triphosphate deaminase3e-24111
NC_014973:243000:254877254877255395519Geobacter sp. M18 chromosome, complete genomedeoxycytidine triphosphate deaminase1e-23109
NC_005791:1377736:139884013988401399460621Methanococcus maripaludis S2, complete genomeBifunctional dCTP deaminase/dUTP diphosphatase5e-22103
NC_015847:1462068:148317414831741483794621Methanococcus maripaludis XI chromosome, complete genomebifunctional dCTP deaminase/dUTP diphosphatase6e-22103
NC_009637:646092:667201667201667821621Methanococcus maripaludis C7 chromosome, complete genomedeoxycytidine triphosphate deaminase7e-22103
NC_002570:388000:397287397287397820534Bacillus halodurans C-125, complete genomedeoxycytidine triphosphate deaminase8e-22103
NC_009634:759372:780450780450781070621Methanococcus vannielii SB chromosome, complete genomedeoxycytidine triphosphate deaminase2e-21102
NC_015636:788532:810308810308810937630Methanothermococcus okinawensis IH1 chromosome, complete genomeDeoxycytidine triphosphate deaminase3e-1994.7
NC_009481:873921:887772887772888296525Synechococcus sp. WH 7803 chromosome, complete genomedeoxycytidine triphosphate deaminase2e-1892
NC_009784:1231791:123929612392961239814519Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequencehypothetical protein2e-1891.7
NC_010407:3174470:318041931804193180604186Clavibacter michiganensis subsp. sepedonicus chromosome, complete4e-1891.3
NC_014217:716500:716949716949717506558Starkeya novella DSM 506 chromosome, complete genomedeoxycytidine triphosphate deaminase5e-1890.9
NC_014471:1153438:115658011565801157107528Ignisphaera aggregans DSM 17230 chromosome, complete genomedCTP deaminase5e-1787.4
NC_018750:6588206:660484066048406605379540Streptomyces venezuelae ATCC 10712, complete genomeDeoxycytidine triphosphate deaminase6e-1787
NC_004463:5540924:555204355520435552606564Bradyrhizobium japonicum USDA 110, complete genomeputative deoxycytidine triphosphate deaminase2e-1685.9
NC_014205:1331594:135131813513181351857540Staphylothermus hellenicus DSM 12710 chromosome, complete genomedeoxycytidine triphosphate deaminase2e-1685.5
NC_014160:869873:871118871118871651534Thermosphaera aggregans DSM 11486 chromosome, complete genomedCTP deaminase3e-1684.7
NC_005773:4899252:492218349221834922743561Pseudomonas syringae pv. phaseolicola 1448A, complete genomeDeoxycytidine triphosphate deaminase (dCTP deaminase)4e-1684.3
NC_014935:1955226:197453819745381975107570Nitratifractor saLSUginis DSM 16511 chromosome, complete genomedctp deaminase4e-1684.3
NC_017954:345430:345552345552346079528Thermogladius cellulolyticus 1633 chromosome, complete genomedeoxycytidine triphosphate deaminase2e-1582.4
NC_017271:3057161:308226830822683082837570Xanthomonas campestris pv. raphani 756C chromosome, completedeoxycytidine triphosphate deaminase2e-1582
NC_021182:2360500:237767623776762378200525Clostridium pasteurianum BC1, complete genomedeoxycytidine triphosphate deaminase3e-1581.6
NC_020126:1873794:191547719154771916145669Myxococcus stipitatus DSM 14675, complete genomedeoxycytidine triphosphate deaminase3e-1581.3
NC_012559:2752825:275683927568392757405567Laribacter hongkongensis HLHK9, complete genomeDcd4e-1477.8
NC_014311:1106871:111014811101481110714567Ralstonia solanacearum PSI07 chromosome, complete genomedeoxycytidine triphosphate deaminase5e-1477.4
NC_019940:2893535:290733929073392907905567Thioflavicoccus mobilis 8321 chromosome, complete genomedeoxycytidine triphosphate deaminase6e-1477
NC_003116:1018813:101881310188131019379567Neisseria meningitidis Z2491, complete genomedeoxycytidine triphosphate deaminase6e-1477
NC_017501:1493292:151271215127121513278567Neisseria meningitidis 8013, complete genomedeoxycytidine triphosphate deaminase6e-1477
NC_017512:789600:789600789600790166567Neisseria meningitidis WUE 2594, complete genomedeoxycytidine triphosphate deaminase6e-1477
NC_017516:1408000:142832114283211428887567Neisseria meningitidis H44/76 chromosome, complete genomedeoxycytidine triphosphate deaminase6e-1477
NC_017515:1402218:142006914200691420635567Neisseria meningitidis M04-240196 chromosome, complete genomedeoxycytidine triphosphate deaminase6e-1477
NC_015222:983647:100145210014521002018567Nitrosomonas sp. AL212 chromosome, complete genomedeoxycytidine triphosphate deaminase9e-1476.6
NC_000961:1727638:173585517358551736325471Pyrococcus horikoshii OT3, complete genomedeoxycytidine triphosphate deaminase1e-1376.3
NC_008767:804655:804655804655805221567Neisseria meningitidis FAM18, complete genomehypothetical protein2e-1375.5
NC_010793:1628500:162900916290091629575567Orientia tsutsugamushi str. Ikeda, complete genomedeoxycytidine triphosphate deaminase3e-1375.1
NC_015474:723553:734332734332734805474Pyrococcus sp. NA2 chromosome, complete genomedeoxycytidine triphosphate deaminase7e-1373.6
NC_011761:2344408:236305623630562363622567Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completedeoxycytidine triphosphate deaminase7e-1373.6
NC_011206:2239109:225775722577572258323567Acidithiobacillus ferrooxidans ATCC 53993, complete genomedeoxycytidine triphosphate deaminase7e-1373.6
NC_013929:5431954:543895754389575439496540Streptomyces scabiei 87.22 chromosome, complete genomenucleotide-phosphate interconversion protein1e-1272.8
NC_017062:61500:818468184682412567Rickettsia typhi str. B9991CWPP chromosome, complete genomedeoxycytidine triphosphate deaminase1e-1169.7
NC_015161:199666:210454210454211065612Deinococcus proteolyticus MRP chromosome, complete genomedeoxycytidine triphosphate deaminase2e-1168.9
NC_013792:33893:459254592546620696Bacillus pseudofirmus OF4 plasmid pBpOF4-01, complete sequencedeoxycytidine triphosphate deaminase3e-1168.2
NC_009784:1231791:123981112398111240296486Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequencehypothetical protein4e-1167.8
NC_017044:80384:980999809998665567Rickettsia parkeri str. Portsmouth chromosome, complete genomedeoxycytidine triphosphate deaminase5e-1167.4
NC_016913:1066790:107138310713831071949567Rickettsia rickettsii str. Brazil chromosome, complete genomedeoxycytidine triphosphate deaminase5e-1167.4
NC_015572:1:504275042751263837Methylomonas methanica MC09 chromosome, complete genomehypothetical protein8e-1063.5
NC_013929:5431954:543949354394935440029537Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein8e-1063.5
NC_012883:360348:369950369950370420471Thermococcus sibiricus MM 739, complete genomeDUTPase6e-0960.5
NC_016024:1876000:188195118819511882508558Candidatus Chloracidobacterium thermophilum B chromosome chromosomedCTP deaminase3e-0858.5
NC_008463:5313527:535351053535105354049540Pseudomonas aeruginosa UCBPP-PA14, complete genomedeoxycytidine triphosphate deaminase3e-0755.1
NC_005773:4899252:492274049227404923258519Pseudomonas syringae pv. phaseolicola 1448A, complete genomeDeoxycytidine triphosphate deaminase (dCTP deaminase)3e-0755.1
NC_008826:170609:184038184038184346309Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence7e-0753.5
NC_018750:6588206:660430766043076604843537Streptomyces venezuelae ATCC 10712, complete genomeDeoxycytidine triphosphate deaminase7e-0753.5
NC_006576:2328427:234363623436362344217582Synechococcus elongatus PCC 6301, complete genomedeoxycytidine triphosphate deaminase1e-0653.1
NC_007604:1967770:197283219728321973413582Synechococcus elongatus PCC 7942, complete genomeDeoxycytidine triphosphate deaminase1e-0653.1
NC_014963:4569015:458484445848444585278435Terriglobus saanensis SP1PR4 chromosome, complete genomedeoxyuridine 5'-triphosphate nucleotidohydrolase Dut1e-0653.1
NC_017277:1717637:172341417234141723995582Synechocystis sp. PCC 6803, complete genomehypothetical protein2e-0652.4
NC_017052:1717836:172361317236131724194582Synechocystis sp. PCC 6803 substr. PCC-N, complete genomehypothetical protein2e-0652.4
NC_017039:1717848:172362517236251724206582Synechocystis sp. PCC 6803 substr. PCC-P, complete genomehypothetical protein2e-0652.4
NC_000911:1718820:172459717245971725178582Synechocystis sp. PCC 6803, complete genomedeoxycytidine triphosphate deaminase2e-0652.4