Pre_GI: BLASTP Hits

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Query: NC_003155:5443230:5451109 Streptomyces avermitilis MA-4680, complete genome

Start: 5451109, End: 5452428, Length: 1320

Host Lineage: Streptomyces avermitilis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain (ATCC 31267) was isolated and characterized in 1978 by R. Burg and colleagues from a soil sample collected in Shizuoka Prefecture, Japan. Antibiotic-producing bacterium. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This organism is a well known producer of the anti-parasitic agent avermectin which is widely used to rid livestock of worm and insect infestations and to protect large numbers of people from river blindness in sub-Saharan Africa.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003888:4927170:4971401497140149736322232Streptomyces coelicolor A3(2), complete genomebi-functional transferase/deacetylase3e-1066.6
NC_004463:2158116:2185433218543321868901458Bradyrhizobium japonicum USDA 110, complete genomechitin synthase2e-20100
NC_019973:5989816:5995260599526059966121353Mesorhizobium australicum WSM2073, complete genomeglycosyl transferase1e-22107
NC_020450:875757:8757578757578770851329Lactococcus lactis subsp. lactis IO-1 DNA, complete genomeglycosyl transferase3e-0860.5
NC_011894:4066926:4097183409718340986371455Methylobacterium nodulans ORS 2060, complete genomeglycosyl transferase family 23e-2099.8
NC_014219:999648:1015409101540910166411233Bacillus selenitireducens MLS10 chromosome, complete genomeglycosyl transferase family 21e-0655.1
NC_010511:4258000:4268721426872142699681248Methylobacterium sp. 4-46 chromosome, complete genomeglycosyl transferase family protein2e-24114
NC_011368:678291:6857256857256870051281Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201,glycosyl transferase family protein6e-1995.5
NC_013891:353625:3692133692133705201308Listeria seeligeri serovar 1/2b str. SLCC3954, complete genomeglycosyl transferase, family 2 protein2e-0860.8
NC_008095:4061899:4064921406492140661741254Myxococcus xanthus DK 1622, complete genomeglycosyl transferase, group 22e-1377
NC_015687:2632557:2632557263255726339001344Clostridium acetobutylicum DSM 1731 chromosome, complete genomeglycosyltransferase5e-0962.8
NC_017295:2630179:2630179263017926315221344Clostridium acetobutylicum EA 2018 chromosome, complete genomeGlycosyltransferase5e-0962.8
NC_003030:2630931:2630931263093126322741344Clostridium acetobutylicum ATCC 824, complete genomeGlycosyltransferase5e-0962.8
NC_020126:5777895:5796780579678057980691290Myxococcus stipitatus DSM 14675, complete genomegroup 2 glycosyl transferase2e-1067.4
NC_015711:5969061:5972082597208259732571176Myxococcus fulvus HW-1 chromosome, complete genomegroup 2 glycosyl transferase3e-1376.6
NC_015675:6615245:6620971662097166223231353Mesorhizobium opportunistum WSM2075 chromosome, complete genomeHyaluronan synthase1e-22107
NC_014923:6060859:6066303606630360676551353Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeHyaluronan synthase1e-22107
NC_015656:3653440:3663249366324936645621314Frankia symbiont of Datisca glomerata chromosome, complete genomeHyaluronan synthase2e-21103
NC_015167:724934:7263757263757278081434Cellulophaga lytica DSM 7489 chromosome, complete genomeHyaluronan synthase5e-1479.3
NC_016078:913713:9185069185069197891284Pelagibacterium halotolerans B2 chromosome, complete genomehypothetical protein2e-1687.8
NC_000961:372000:416150416150417094945Pyrococcus horikoshii OT3, complete genomehypothetical protein7e-0962.4
NC_011999:728353:7325187325187337621245Macrococcus caseolyticus JCSC5402, complete genomeintercellular adhesion protein IcaA homolog4e-0963.2
NC_009937:4350132:4370061437006143712541194Azorhizobium caulinodans ORS 571, complete genomeN-acetylglucosaminyltransferase6e-22105
NC_017249:7993713:8091092809109280925491458Bradyrhizobium japonicum USDA 6, complete genomeN-acetylglucosaminyltransferase, nodulation protein2e-20100
NC_000914:135534:1560951560951573361242Rhizobium sp. NGR234 plasmid pNGR234a, complete sequenceNodC1e-1998.2
NC_010529:296500:3086633086633100151353Cupriavidus taiwanensis plasmid pRALTA, complete sequenceNodC N-acetylglucosaminyltransferase6e-1892.4
NC_018870:757416:7975377975377988921356Thermacetogenium phaeum DSM 12270 chromosome, complete genomepoly-beta-1,6-N-acetyl-D-glucosamine synthase IcaA5e-0652.8
NC_015474:983468:9939969939969950571062Pyrococcus sp. NA2 chromosome, complete genomeputative glycosyl transferase5e-0962.8