Pre_GI: BLASTP Hits

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Query: NC_003155:2730469:2749073 Streptomyces avermitilis MA-4680, complete genome

Start: 2749073, End: 2750248, Length: 1176

Host Lineage: Streptomyces avermitilis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain (ATCC 31267) was isolated and characterized in 1978 by R. Burg and colleagues from a soil sample collected in Shizuoka Prefecture, Japan. Antibiotic-producing bacterium. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This organism is a well known producer of the anti-parasitic agent avermectin which is widely used to rid livestock of worm and insect infestations and to protect large numbers of people from river blindness in sub-Saharan Africa.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013929:2375613:2392612239261223936851074Streptomyces scabiei 87.22 chromosome, complete genomecellulose/chitin binding protein5e-163574
NC_016114:1435436:1457402145740214584811080Streptomyces flavogriseus ATCC 33331 chromosome, complete genomechitin-binding protein7e-148523
NC_016109:6640000:6653798665379866548981101Kitasatospora setae KM-6054, complete genomeputative cellulose-binding protein3e-80298
NC_010572:188500:2032932032932043751083Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative secreted cellulose-binding protein2e-71270
NC_013947:3080290:310734831073483108268921Stackebrandtia nassauensis DSM 44728 chromosome, complete genomechitin-binding domain 3 protein4e-62239
NC_021177:1418213:1435065143506514361291065Streptomyces fulvissimus DSM 40593, complete genomesecreted cellulose-binding protein4e-39162
NC_005085:2774370:2792035279203527931951161Chromobacterium violaceum ATCC 12472, complete genomecarbohydrate-binding protein2e-35150
NC_013947:1696671:170058617005861701191606Stackebrandtia nassauensis DSM 44728 chromosome, complete genomechitin-binding domain 3 protein1e-20101
NC_013929:6371019:638852663885266389143618Streptomyces scabiei 87.22 chromosome, complete genomechitin binding protein6e-1789
NC_007333:1457000:147270514727051473373669Thermobifida fusca YX, complete genomeputative secreted cellulose-binding protein5e-1685.9
NC_015434:1173794:117978111797811180461681Verrucosispora maris AB-18-032 chromosome, complete genomecellulose-binding protein2e-1583.6
NC_014837:3633378:3642777364277736443241548Pantoea sp. At-9b chromosome, complete genomechitin-binding domain 3 protein2e-1480.5
NC_013093:4890557:4910160491016049116411482Actinosynnema mirum DSM 43827, complete genomeserine/threonine protein kinase2e-1480.1
NC_013947:3347174:336497833649783365571594Stackebrandtia nassauensis DSM 44728 chromosome, complete genomechitin-binding domain 3 protein6e-1479
NC_017093:5410932:5414074541407454151411068Actinoplanes missouriensis 431, complete genomeputative GDSL-like lipase/acylhydrolase with Cellulose binding domain6e-1479
NC_007333:1743890:1863968186396818667452778Thermobifida fusca YX, complete genomecellulose-binding, family II, bacterial type2e-1377.4
NC_014151:370882:3708823708823722461365Cellulomonas flavigena DSM 20109 chromosome, complete genomecellulose-binding family II2e-1273.9
NC_017265:3375463:3381955338195533835591605Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative carbohydrate-binding protein6e-1272.4
NC_008150:3015000:3022003302200330236071605Yersinia pestis Antiqua, complete genomeputative carbohydrate-binding protein1e-1171.6
NC_010634:1056441:1068434106843410700381605Yersinia pseudotuberculosis PB1/+, complete genomechitin-binding domain-containing protein1e-1171.6
NC_003143:3583468:3590325359032535919291605Yersinia pestis CO92, complete genomeputative carbohydrate-binding protein1e-1171.6
NC_008149:1002453:1013652101365210152561605Yersinia pestis Nepal516, complete genomecarbohydrate-binding protein1e-1171.6
NC_005810:754340:7663897663897679931605Yersinia pestis biovar Microtus str. 91001, complete genomeputative carbohydrate-binding protein1e-1171.6
NC_006155:1074298:1086291108629110878951605Yersinia pseudotuberculosis IP 32953, complete genomeputative carbohydrate-binding protein1e-1171.6
NC_010465:3597000:3603049360304936046531605Yersinia pseudotuberculosis YPIII, complete genomechitin-binding domain 3 protein1e-1171.6
NC_010159:3502350:3509207350920735108111605Yersinia pestis Angola, complete genomechitin binding domain protein1e-1171.6
NC_009381:3228500:3234589323458932361931605Yersinia pestis Pestoides F chromosome, complete genomecarbohydrate-binding protein1e-1171.6
NC_004088:1075454:1086653108665310882571605Yersinia pestis KIM, complete genomehypothetical protein9e-1271.6
NC_017160:3560153:3567010356701035686141605Yersinia pestis D182038 chromosome, complete genomecarbohydrate-binding protein9e-1271.6
NC_017168:2158839:2170038217003821716421605Yersinia pestis A1122 chromosome, complete genomechitin binding domain-containing protein1e-1171.6
NC_017154:3576256:3583113358311335847171605Yersinia pestis D106004 chromosome, complete genomeputative carbohydrate-binding protein1e-1171.6
NC_014029:3633955:3640812364081236424161605Yersinia pestis Z176003 chromosome, complete genomeputative carbohydrate-binding protein1e-1171.6
NC_009708:3542336:3549193354919335507971605Yersinia pseudotuberculosis IP 31758 chromosome, complete genomechitin binding domain-containing protein1e-1171.6
NC_015514:1923428:1938086193808619395821497Cellulomonas fimi ATCC 484 chromosome, complete genomecellulose-binding family II protein1e-1170.9
NC_010336:1282265:1300030130003013012141185Francisella philomiragia subsp. philomiragia ATCC 25017, completehypothetical protein9e-1168.2
NC_016582:8711199:8719299871929987207201422Streptomyces bingchenggensis BCW-1 chromosome, complete genomebeta-1,4-xylanase1e-1067.8
NC_018750:7540450:7540450754045075417571308Streptomyces venezuelae ATCC 10712, complete genomeEndo-1,4-beta-xylanase A precursor5e-1065.9
NC_014165:374674:4005694005694017501182Thermobispora bispora DSM 43833 chromosome, complete genomefamily 12 glycoside hydrolase7e-1065.5
NC_015514:33972:5202352023547612739Cellulomonas fimi ATCC 484 chromosome, complete genomeglycoside hydrolase family 95e-0962.8
NC_020064:3998715:4049110404911040505371428Serratia marcescens FGI94, complete genomehypothetical protein4e-0962.8
NC_017186:8588000:8610038861003886122062169Amycolatopsis mediterranei S699 chromosome, complete genomeendoglucanase5e-0858.9
NC_021177:5697210:5717921571792157197951875Streptomyces fulvissimus DSM 40593, complete genomeChitinase III6e-0858.9
NC_017093:8518961:853760685376068538439834Actinoplanes missouriensis 431, complete genomeputative secreted chitin-binding protein8e-0858.5
NC_009380:3384737:3393833339383333952391407Salinispora tropica CNB-440 chromosome, complete genomecellulose-binding family II protein9e-0858.5
NC_006155:3992818:4000604400060440020131410Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein1e-0757.8
NC_018750:5399316:5412029541202954137891761Streptomyces venezuelae ATCC 10712, complete genomeChitinase1e-0757.8
NC_014393:3979350:3982200398220039837471548Clostridium cellulovorans 743B chromosome, complete genomeglycoside hydrolase family 52e-0757
NC_016627:4871875:4868075486807548718783804Clostridium clariflavum DSM 19732 chromosome, complete genomecellobiohydrolase A (1,4-beta-cellobiosidase A)4e-0756.2
NC_016627:4871875:4871875487187548748803006Clostridium clariflavum DSM 19732 chromosome, complete genomecellobiohydrolase A (1,4-beta-cellobiosidase A)7e-0755.5
NC_007912:2930063:2932444293244429339791536Saccharophagus degradans 2-40, complete genomehypothetical protein6e-0652.4
NC_017316:2637707:263770726377072638408702Enterococcus faecalis OG1RF chromosome, complete genomechitin binding protein6e-0652.4
UCMB5137:1676568:168488716848871685504618Bacillus atrophaeus UCMB-5137chitin binding protein7e-0652
NC_018868:3229381:3251415325141532529471533Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomehypothetical protein7e-0652