Query: NC_003063:1128370 Agrobacterium tumefaciens str. C58 chromosome linear, complete
Start: 1128370, End: 1155394, Length: 27025
Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria
General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_003305:922357 | 922357 | 948099 | 25743 | Agrobacterium tumefaciens str. C58 chromosome linear, complete | 0 | 47510 | BLASTN svg | BLASTP svg |
NC_015376:2010009 | 2010009 | 2040694 | 30686 | Burkholderia gladioli BSR3 chromosome chromosome 2, complete | 2e-167 | 597 | BLASTN svg | BLASTP svg |
NC_015566:3417951* | 3417951 | 3458599 | 40649 | Serratia sp. AS12 chromosome, complete genome | 6e-165 | 589 | BLASTN svg | BLASTP svg |
NC_007509:971500 | 971500 | 991166 | 19667 | Burkholderia sp. 383 chromosome 3, complete sequence | 4e-163 | 583 | BLASTN svg | BLASTP svg |
NC_007974:1607500 | 1607500 | 1628879 | 21380 | Ralstonia metallidurans CH34 chromosome 2, complete sequence | 8e-158 | 565 | BLASTN svg | BLASTP svg |
NC_014500:2688095 | 2688095 | 2713286 | 25192 | Dickeya dadantii 3937 chromosome, complete genome | 3e-139 | 504 | BLASTN svg | BLASTP svg |
NC_013956:1810026 | 1810026 | 1829099 | 19074 | Pantoea ananatis LMG 20103 chromosome, complete genome | 2e-131 | 478 | BLASTN svg | BLASTP svg |
NC_020064:1409596* | 1409596 | 1456802 | 47207 | Serratia marcescens FGI94, complete genome | 5e-116 | 426 | BLASTN svg | BLASTP svg |
NC_015968:1165829 | 1165829 | 1186395 | 20567 | Enterobacter asburiae LF7a chromosome, complete genome | 7e-103 | 383 | BLASTN svg | BLASTP svg |
NC_013592:2059138 | 2059138 | 2091676 | 32539 | Dickeya dadantii Ech586, complete genome | 1e-101 | 379 | BLASTN svg | BLASTP svg |
NC_016027:1357659 | 1357659 | 1401496 | 43838 | Gluconacetobacter xylinus NBRC 3288, complete genome | 1e-98 | 369 | BLASTN svg | BLASTP svg |
NC_014306:3006028* | 3006028 | 3042131 | 36104 | Erwinia billingiae Eb661, complete genome | 2e-97 | 365 | BLASTN svg | BLASTP svg |
NC_006677:2402282* | 2402282 | 2433184 | 30903 | Gluconobacter oxydans 621H, complete genome | 4e-92 | 347 | BLASTN svg | BLASTP svg |
NC_007005:3414579* | 3414579 | 3441252 | 26674 | Pseudomonas syringae pv. syringae B728a, complete genome | 4e-89 | 337 | BLASTN svg | BLASTP svg |
NC_014258:127500 | 127500 | 149126 | 21627 | Pantoea vagans C9-1 plasmid pPag3, complete sequence | 2e-56 | 228 | BLASTN svg | BLASTP svg |
NC_007925:3911323 | 3911323 | 3933151 | 21829 | Rhodopseudomonas palustris BisB18, complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_015563:4629436 | 4629436 | 4652196 | 22761 | Delftia sp. Cs1-4 chromosome, complete genome | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_012803:2195808* | 2195808 | 2249761 | 53954 | Micrococcus luteus NCTC 2665, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_012587:1203103* | 1203103 | 1225516 | 22414 | Rhizobium sp. NGR234, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_015183:51500* | 51500 | 74088 | 22589 | Agrobacterium sp. H13-3 chromosome, complete genome | 8e-07 | 63.9 | BLASTN svg | BLASTP svg |