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Query: NC_003063:1128370 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1128370, End: 1155394, Length: 27025

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003305:92235792235794809925743Agrobacterium tumefaciens str. C58 chromosome linear, complete047510BLASTN svgBLASTP svg
NC_015376:20100092010009204069430686Burkholderia gladioli BSR3 chromosome chromosome 2, complete2e-167597BLASTN svgBLASTP svg
NC_015566:3417951*3417951345859940649Serratia sp. AS12 chromosome, complete genome6e-165589BLASTN svgBLASTP svg
NC_007509:97150097150099116619667Burkholderia sp. 383 chromosome 3, complete sequence4e-163583BLASTN svgBLASTP svg
NC_007974:16075001607500162887921380Ralstonia metallidurans CH34 chromosome 2, complete sequence8e-158565BLASTN svgBLASTP svg
NC_014500:26880952688095271328625192Dickeya dadantii 3937 chromosome, complete genome3e-139504BLASTN svgBLASTP svg
NC_013956:18100261810026182909919074Pantoea ananatis LMG 20103 chromosome, complete genome2e-131478BLASTN svgBLASTP svg
NC_020064:1409596*1409596145680247207Serratia marcescens FGI94, complete genome5e-116426BLASTN svgBLASTP svg
NC_015968:11658291165829118639520567Enterobacter asburiae LF7a chromosome, complete genome7e-103383BLASTN svgBLASTP svg
NC_013592:20591382059138209167632539Dickeya dadantii Ech586, complete genome1e-101379BLASTN svgBLASTP svg
NC_016027:13576591357659140149643838Gluconacetobacter xylinus NBRC 3288, complete genome1e-98369BLASTN svgBLASTP svg
NC_014306:3006028*3006028304213136104Erwinia billingiae Eb661, complete genome2e-97365BLASTN svgBLASTP svg
NC_006677:2402282*2402282243318430903Gluconobacter oxydans 621H, complete genome4e-92347BLASTN svgBLASTP svg
NC_007005:3414579*3414579344125226674Pseudomonas syringae pv. syringae B728a, complete genome4e-89337BLASTN svgBLASTP svg
NC_014258:12750012750014912621627Pantoea vagans C9-1 plasmid pPag3, complete sequence2e-56228BLASTN svgBLASTP svg
NC_007925:39113233911323393315121829Rhodopseudomonas palustris BisB18, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_015563:46294364629436465219622761Delftia sp. Cs1-4 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_012803:2195808*2195808224976153954Micrococcus luteus NCTC 2665, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_012587:1203103*1203103122551622414Rhizobium sp. NGR234, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015183:51500*515007408822589Agrobacterium sp. H13-3 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg