Some Help

Query: NC_002950:155873 Porphyromonas gingivalis W83, complete genome

Start: 155873, End: 183254, Length: 27382

Host Lineage: Porphyromonas gingivalis; Porphyromonas; Porphyromonadaceae; Bacteroidales; Bacteroidetes; Bacteria

General Information: This strain (also known as HG66) is virulent in a mouse model and has been extensively studied. It was originally isolated by H. Werner in the 1950s in Bonn, Germany, from an unknown human infection. Associated with severe and chronic periodontal disease. This organism is associated with severe and chronic periodontal (tissues surrounding and supporting the tooth) diseases. Progression of the disease is caused by colonization by this organism in an anaerobic environment in host tissues and severe progression results in loss of the tissues supporting the tooth and eventually loss of the tooth itself. The black pigmentation characteristic of this bacterium comes from iron acquisition that does not use the typical siderophore system of other bacteria but accumulates hemin.Peptides appear to be the predominant carbon and energy source of this organism, perhaps in keeping with its ability to destroy host tissue. Oxygen tolerance systems play a part in establishment of the organism in the oral cavity, including a superoxide dismutase. Pathogenic factors include extracellular adhesins that mediate interactions with other bacteria as well as the extracellular matrix, and a host of degradative enzymes that are responsible for tissue degradation and spread of the organism including the gingipains, which are trypsin-like cysteine proteases.

Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015571:440605*44060546793427330Porphyromonas gingivalis TDC60, complete genome051990BLASTN svgBLASTP svg
NC_010729:265791*26579129310327313Porphyromonas gingivalis ATCC 33277, complete genome029070BLASTN svgBLASTP svg
NC_004129:5481629*5481629550572324095Pseudomonas fluorescens Pf-5, complete genome4e-18101BLASTN svgBLASTP svg
NC_014033:1691822*1691822172381531994Prevotella ruminicola 23 chromosome, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_013037:5536433*5536433556659330161Dyadobacter fermentans DSM 18053, complete genome6e-1797.6BLASTN svgBLASTP svg
NC_009348:3029963*3029963306659936637Aeromonas salmonicida subsp. salmonicida A449, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_011770:4763506*4763506478993126426Pseudomonas aeruginosa LESB58, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_002516:1031386*1031386109196460579Pseudomonas aeruginosa PAO1, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010170:50877425087742511517327432Bordetella petrii, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_008463:4566976*4566976460307636101Pseudomonas aeruginosa UCBPP-PA14, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_007604:22136592213659223764323985Synechococcus elongatus PCC 7942, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_006576:20731632073163209509621934Synechococcus elongatus PCC 6301, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_015571:1495286*1495286151559920314Porphyromonas gingivalis TDC60, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_010729:1818500*1818500183909920600Porphyromonas gingivalis ATCC 33277, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_002950:353549*35354937859925051Porphyromonas gingivalis W83, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_003919:4568892*4568892459309924208Xanthomonas axonopodis pv. citri str. 306, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007508:4593446*4593446461871425269Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_010717:4851000*4851000487555824559Xanthomonas oryzae pv. oryzae PXO99A, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_014033:77275477275479465621903Prevotella ruminicola 23 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_002939:1601706*1601706162134919644Geobacter sulfurreducens PCA, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_019960:1198067*1198067122826330197Prevotella dentalis DSM 3688 chromosome 1, complete sequence5e-0867.9BLASTN svgBLASTP svg
NC_015186:2931000*2931000296035629357Acidiphilium multivorum AIU301, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_020260:3004500*3004500302796523466Cronobacter sakazakii Sp291, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_011831:85343385343387601022578Chloroflexus aggregans DSM 9485, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007645:2408125*2408125246220454080Hahella chejuensis KCTC 2396, complete genome2e-0765.9BLASTN svgBLASTP svg
AP010958:2134556*2134556215269018135Escherichia coli O103:H2 str. 12009 DNA, complete genome8e-0763.9BLASTN svgBLASTP svg
CU928160:1978500*1978500201443135932Escherichia coli IAI1 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_019673:2635585*2635585265953723953Saccharothrix espanaensis DSM 44229 complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013521:4240468*4240468426799927532Sanguibacter keddieii DSM 10542, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010814:2758902*2758902278690628005Geobacter lovleyi SZ, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009512:59209605920960595518534226Pseudomonas putida F1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_005070:2308363*2308363233088122519Synechococcus sp. WH 8102, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_002947:61525006152500618549933000Pseudomonas putida KT2440, complete genome3e-0661.9BLASTN svgBLASTP svg