Pre_GI: BLASTN Hits

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Query: NC_002505:860789 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete

Start: 860789, End: 889906, Length: 29118

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is an epidemic serogroup of Vibrio cholerae isolated in 1971 in Bangladesh and is distinguished from the classical biotype due to hemolysin production. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009999:38832388326239723566Shewanella baltica OS195 plasmid pS19502, complete sequence1e-1593.7BLASTN svgBLASTP svg
NC_009997:40913714091371411415622786Shewanella baltica OS195, complete genome1e-70276BLASTN svgBLASTP svg
NC_009997:20698942069894209159921706Shewanella baltica OS195, complete genome8e-69270BLASTN svgBLASTP svg
NC_009997:72684072684075726930430Shewanella baltica OS195, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_004347:34373693437369345870921341Shewanella oneidensis MR-1, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_015633:29195012919501294340723907Vibrio anguillarum 775 chromosome chromosome I, complete sequence6e-1797.6BLASTN svgBLASTP svg
NC_015633:33800033800035668318684Vibrio anguillarum 775 chromosome chromosome I, complete sequence7e-63250BLASTN svgBLASTP svg
NC_015633:17020001702000172537323374Vibrio anguillarum 775 chromosome chromosome I, complete sequence7e-63250BLASTN svgBLASTP svg
NC_015633:46114346114348763326491Vibrio anguillarum 775 chromosome chromosome I, complete sequence2e-35159BLASTN svgBLASTP svg
NC_015633:2327500*2327500235796830469Vibrio anguillarum 775 chromosome chromosome I, complete sequence3e-34155BLASTN svgBLASTP svg
NC_015637:32556132556134777622216Vibrio anguillarum 775 chromosome chromosome II, complete sequence7e-63250BLASTN svgBLASTP svg
NC_002505:514732*51473255228437553Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete1e-55226BLASTN svgBLASTP svg
NC_009783:16656101665610168785322244Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequence8e-78299BLASTN svgBLASTP svg
NC_004605:13854441385444145786672423Vibrio parahaemolyticus RIMD 2210633 chromosome II, complete0878BLASTN svgBLASTP svg
NC_004459:32439873243987327990435918Vibrio vulnificus CMCP6 chromosome I, complete sequence4e-27131BLASTN svgBLASTP svg
NC_004459:20254362025436205524629811Vibrio vulnificus CMCP6 chromosome I, complete sequence2e-1489.7BLASTN svgBLASTP svg
NC_004459:349500*34950040074451245Vibrio vulnificus CMCP6 chromosome I, complete sequence02811BLASTN svgBLASTP svg
NC_004460:12371291237129126309925971Vibrio vulnificus CMCP6 chromosome II, complete sequence01846BLASTN svgBLASTP svg
NC_005139:2201820*2201820227810176282Vibrio vulnificus YJ016 chromosome I, complete sequence7e-66260BLASTN svgBLASTP svg
NC_005139:79654679654681991523370Vibrio vulnificus YJ016 chromosome I, complete sequence02817BLASTN svgBLASTP svg