Pre_GI: BLASTN Hits

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Query: NC_016582:7033000 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 7033000, End: 7071336, Length: 38337

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_021177:3598700*3598700361863819939Streptomyces fulvissimus DSM 40593, complete genome01411BLASTN svgBLASTP svg
NC_003888:45235004523500454956026061Streptomyces coelicolor A3(2), complete genome2e-140507BLASTN svgBLASTP svg
NC_010572:45855004585500461328027781Streptomyces griseus subsp. griseus NBRC 13350, complete genome2e-125458BLASTN svgBLASTP svg
NC_010572:3925803*3925803395628730485Streptomyces griseus subsp. griseus NBRC 13350, complete genome4e-77297BLASTN svgBLASTP svg
NC_003888:76596397659639770388744249Streptomyces coelicolor A3(2), complete genome1e-43186BLASTN svgBLASTP svg
NC_015957:10403997*104039971042720123205Streptomyces violaceusniger Tu 4113 chromosome, complete genome3e-35159BLASTN svgBLASTP svg
NC_013757:78083578083581363532801Geodermatophilus obscurus DSM 43160, complete genome3e-19105BLASTN svgBLASTP svg
NC_015953:34565353456535350619749663Streptomyces sp. SirexAA-E chromosome, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_018750:3661243*3661243368475823516Streptomyces venezuelae ATCC 10712, complete genome8e-1177.8BLASTN svgBLASTP svg
NC_014246:876000*87600089916923170Mobiluncus curtisii ATCC 43063 chromosome, complete genome8e-1177.8BLASTN svgBLASTP svg
NC_008095:4189082*4189082423409745016Myxococcus xanthus DK 1622, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_018750:61326196132619616363731019Streptomyces venezuelae ATCC 10712, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_008705:5144433*5144433517009925667Mycobacterium sp. KMS, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_008146:5106775*5106775513109924325Mycobacterium sp. MCS, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_007777:5087405*5087405511177224368Frankia sp. CcI3, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_019673:1275627*1275627131011934493Saccharothrix espanaensis DSM 44229 complete genome7e-0867.9BLASTN svgBLASTP svg
NC_018750:22703142270314231346543152Streptomyces venezuelae ATCC 10712, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_015671:31533253153325317759924275Cellvibrio gilvus ATCC 13127 chromosome, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_018750:52938295293829531859924771Streptomyces venezuelae ATCC 10712, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_003888:2814360*2814360285868544326Streptomyces coelicolor A3(2), complete genome5e-0661.9BLASTN svgBLASTP svg