Query: NC_014169:703889 Bifidobacterium longum subsp. longum JDM301 chromosome, complete
Start: 703889, End: 728275, Length: 24387
Host Lineage: Bifidobacterium longum; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria
General Information: Representatives of this genus naturally colonize the human gastrointestinal tract (GIT) and are important for establishing and maintaining homeostasis of the intestinal ecosystem to allow for normal digestion. Their presence has been associated with beneficial health effects, such as prevention of diarrhea, amelioration of lactose intolerance, or immunomodulation. The stabilizing effect on GIT microflora is attributed to the capacity of bifidobacteria to produce bacteriocins, which are bacteriostatic agents with a broad spectrum of action, and to their pH-reducing activity. Most of the ~30 known species of bifidobacteria have been isolated from the mammalian GIT, and some from the vaginal and oral cavity. All are obligate anaerobes belonging to the Actinomycetales, branch of Gram-positive bacteria with high GC content that also includes Corynebacteria, Mycobacteria, and Streptomycetes. This organism is found in adult humans and formula fed infants as a normal component of gut flora.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_010505:1581429* | 1581429 | 1607101 | 25673 | Methylobacterium radiotolerans JCM 2831, complete genome | 2e-13 | 85.7 | BLASTN svg | BLASTP svg |
NC_015957:6859259 | 6859259 | 6878954 | 19696 | Streptomyces violaceusniger Tu 4113 chromosome, complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_005125:760721 | 760721 | 804748 | 44028 | Gloeobacter violaceus PCC 7421, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_013851:949973* | 949973 | 980519 | 30547 | Allochromatium vinosum DSM 180 chromosome, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_011979:3045952* | 3045952 | 3069141 | 23190 | Geobacter sp. FRC-32, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_008752:3511006 | 3511006 | 3533925 | 22920 | Acidovorax avenae subsp. citrulli AAC00-1, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_007517:2055305* | 2055305 | 2088714 | 33410 | Geobacter metallireducens GS-15, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_012857:1097400 | 1097400 | 1123498 | 26099 | Ralstonia pickettii 12D chromosome 2, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_020453:4696000* | 4696000 | 4718433 | 22434 | Agromonas oligotrophica S58 DNA, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_007951:570500* | 570500 | 604717 | 34218 | Burkholderia xenovorans LB400 chromosome 1, complete sequence | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_006905:2630000 | 2630000 | 2654389 | 24390 | Salmonella enterica subsp. enterica serovar Choleraesuis str | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_006814:1538175 | 1538175 | 1562567 | 24393 | Lactobacillus acidophilus NCFM, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |