Query: NC_013410:3280039 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,
Start: 3280039, End: 3340785, Length: 60747
Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria
General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_015500:2112975 | 2112975 | 2149416 | 36442 | Treponema brennaborense DSM 12168 chromosome, complete genome | 6e-22 | 115 | BLASTN svg | BLASTP svg |
NC_014033:103020 | 103020 | 137080 | 34061 | Prevotella ruminicola 23 chromosome, complete genome | 2e-18 | 103 | BLASTN svg | BLASTP svg |
NC_008027:1559083* | 1559083 | 1582369 | 23287 | Pseudomonas entomophila L48, complete genome | 5e-13 | 85.7 | BLASTN svg | BLASTP svg |
NC_012660:1804610* | 1804610 | 1835124 | 30515 | Pseudomonas fluorescens SBW25 chromosome, complete genome | 2e-12 | 83.8 | BLASTN svg | BLASTP svg |
NC_008782:3167440 | 3167440 | 3222165 | 54726 | Acidovorax sp. JS42, complete genome | 2e-09 | 73.8 | BLASTN svg | BLASTP svg |
NC_010506:2046000* | 2046000 | 2080825 | 34826 | Shewanella woodyi ATCC 51908, complete genome | 7e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_002939:2454686 | 2454686 | 2474980 | 20295 | Geobacter sulfurreducens PCA, complete genome | 1e-07 | 67.9 | BLASTN svg | BLASTP svg |
NC_015145:2693749 | 2693749 | 2736618 | 42870 | Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genome | 1e-07 | 67.9 | BLASTN svg | BLASTP svg |
NC_015152:272500 | 272500 | 299494 | 26995 | Spirochaeta sp. Buddy chromosome, complete genome | 1e-07 | 67.9 | BLASTN svg | BLASTP svg |
NC_021171:4519495 | 4519495 | 4538871 | 19377 | Bacillus sp. 1NLA3E, complete genome | 5e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_019968:891904 | 891904 | 919486 | 27583 | Prevotella dentalis DSM 3688 chromosome 2, complete sequence | 5e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_015160:3556114 | 3556114 | 3576733 | 20620 | Odoribacter splanchnicus DSM 20712 chromosome, complete genome | 5e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_015500:900807 | 900807 | 930366 | 29560 | Treponema brennaborense DSM 12168 chromosome, complete genome | 2e-06 | 63.9 | BLASTN svg | BLASTP svg |
NC_006513:3486558 | 3486558 | 3513428 | 26871 | Azoarcus sp. EbN1, complete genome | 7e-06 | 61.9 | BLASTN svg | BLASTP svg |