Pre_GI: BLASTN Hits

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Query: NC_013410:3017983 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 3017983, End: 3040099, Length: 22117

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015138:20697392069739210074231004Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete4e-1177.8BLASTN svgBLASTP svg
NC_014973:4174668*4174668421021135544Geobacter sp. M18 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_011146:896000*89600091840322404Geobacter bemidjiensis Bem, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_014219:830966*83096685890127936Bacillus selenitireducens MLS10 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014910:2015627*2015627203840722781Alicycliphilus denitrificans BC chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_015733:11799771179977119809918123Pseudomonas putida S16 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007005:14159621415962143723321272Pseudomonas syringae pv. syringae B728a, complete genome3e-0661.9BLASTN svgBLASTP svg