Pre_GI: BLASTN Hits

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Query: NC_013410:1953293 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 1953293, End: 1978315, Length: 25023

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_011080:819103*81910384387224770Salmonella enterica subsp. enterica serovar Newport str. SL254,8e-1073.8BLASTN svgBLASTP svg
NC_011083:862901*86290188778924889Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,1e-0869.9BLASTN svgBLASTP svg
NC_010102:2287934*2287934231106023127Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,1e-0869.9BLASTN svgBLASTP svg
NC_003197:815964*81596483952123558Salmonella typhimurium LT2, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_006905:848000*84800086575317754Salmonella enterica subsp. enterica serovar Choleraesuis str2e-0765.9BLASTN svgBLASTP svg
NC_013850:4612812*4612812463649923688Klebsiella variicola At-22 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009648:838000*83800086209024091Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome3e-0661.9BLASTN svgBLASTP svg