Pre_GI: BLASTN Hits

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Query: NC_013410:1152188 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 1152188, End: 1194172, Length: 41985

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_014933:3715467*3715467373786022394Bacteroides helcogenes P 36-108 chromosome, complete genome4e-56228BLASTN svgBLASTP svg
NC_004663:22467562246756226742420669Bacteroides thetaiotaomicron VPI-5482, complete genome1e-49206BLASTN svgBLASTP svg
NC_006347:38432283843228386979726570Bacteroides fragilis YCH46, complete genome6e-21111BLASTN svgBLASTP svg
NC_003228:37520353752035377147219438Bacteroides fragilis NCTC 9343, complete genome6e-21111BLASTN svgBLASTP svg
NC_010524:33910753391075341365222578Leptothrix cholodnii SP-6, complete genome1e-18103BLASTN svgBLASTP svg
NC_014910:465980*46598050776541786Alicycliphilus denitrificans BC chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_004113:1234048*1234048126028626239Thermosynechococcus elongatus BP-1, complete genome1e-0663.9BLASTN svgBLASTP svg