Pre_GI: BLASTN Hits

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Query: NC_012917:2786283 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 2786283, End: 2805786, Length: 19504

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013421:29722692972269300638334115Pectobacterium wasabiae WPP163, complete genome04849BLASTN svgBLASTP svg
NC_002505:514732*51473255228437553Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete7e-56226BLASTN svgBLASTP svg
NC_012917:26410002641000266615925160Pectobacterium carotovorum subsp. carotovorum PC1, complete genome2e-37165BLASTN svgBLASTP svg
NC_012912:32591332591334833122419Dickeya zeae Ech1591, complete genome2e-34155BLASTN svgBLASTP svg
NC_012912:40718594071859411755145693Dickeya zeae Ech1591, complete genome1e-32149BLASTN svgBLASTP svg
NC_004547:3866439*3866439389314026702Erwinia carotovora subsp. atroseptica SCRI1043, complete genome1e-29139BLASTN svgBLASTP svg
NC_013421:55319355319358079227600Pectobacterium wasabiae WPP163, complete genome5e-29137BLASTN svgBLASTP svg
NC_013421:40060854006085403278526701Pectobacterium wasabiae WPP163, complete genome5e-29137BLASTN svgBLASTP svg
NC_013421:15453861545386156866923284Pectobacterium wasabiae WPP163, complete genome5e-29137BLASTN svgBLASTP svg
NC_012912:24270924270927148728779Dickeya zeae Ech1591, complete genome8e-28133BLASTN svgBLASTP svg
NC_014500:20191132019113204779528683Dickeya dadantii 3937 chromosome, complete genome8e-28133BLASTN svgBLASTP svg
NC_004547:91355391355395334239790Erwinia carotovora subsp. atroseptica SCRI1043, complete genome3e-27131BLASTN svgBLASTP svg
NC_004547:1174650*1174650121156236913Erwinia carotovora subsp. atroseptica SCRI1043, complete genome3e-27131BLASTN svgBLASTP svg
NC_013421:80154280154282369422153Pectobacterium wasabiae WPP163, complete genome3e-24121BLASTN svgBLASTP svg
NC_012912:84433984433986800523667Dickeya zeae Ech1591, complete genome4e-23117BLASTN svgBLASTP svg
NC_003143:41057544105754412910623353Yersinia pestis CO92, complete genome7e-22113BLASTN svgBLASTP svg
NC_012912:2553391*2553391257454821158Dickeya zeae Ech1591, complete genome1e-20109BLASTN svgBLASTP svg
NC_010465:42909542909545249323399Yersinia pseudotuberculosis YPIII, complete genome3e-18101BLASTN svgBLASTP svg
NC_012912:2800884*2800884281980818925Dickeya zeae Ech1591, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_004547:1062410*1062410108132518916Erwinia carotovora subsp. atroseptica SCRI1043, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_020063:20772332077233210134824116Enterobacteriaceae bacterium strain FGI 57, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_015566:40490004049000406909920100Serratia sp. AS12 chromosome, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_013421:13978411397841141728819448Pectobacterium wasabiae WPP163, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_003198:27694492769449279300723559Salmonella enterica subsp. enterica serovar Typhi str. CT18,1e-1489.7BLASTN svgBLASTP svg
NC_004631:27553062755306277886423559Salmonella enterica subsp. enterica serovar Typhi Ty2, complete1e-1489.7BLASTN svgBLASTP svg
NC_009648:4497749*4497749452411726369Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_011149:28298112829811285287123061Salmonella enterica subsp. enterica serovar Agona str. SL483,1e-1489.7BLASTN svgBLASTP svg
NC_003143:1033500*1033500105953426035Yersinia pestis CO92, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_004088:3661601*3661601368761226012Yersinia pestis KIM, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_005810:3964468*3964468399026325796Yersinia pestis biovar Microtus str. 91001, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_006155:3779381*3779381380559426214Yersinia pseudotuberculosis IP 32953, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_008149:35294283529428355543826011Yersinia pestis Nepal516, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_008150:36122436122439094629723Yersinia pestis Antiqua, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010159:138879*13887916617427296Yersinia pestis Angola, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010465:933488*93348895909925612Yersinia pseudotuberculosis YPIII, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_012912:47377034737703476071123009Dickeya zeae Ech1591, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_002655:46531604653160470328250123Escherichia coli O157:H7 EDL933, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_002695:45841774584177463575951583Escherichia coli O157:H7 str. Sakai, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_010634:3692321*3692321371595823638Yersinia pseudotuberculosis PB1/+, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_003197:2894344*2894344294288048537Salmonella typhimurium LT2, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_010102:28817142881714290709925386Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,4e-1177.8BLASTN svgBLASTP svg
NC_010473:62381062381065051726708Escherichia coli str. K-12 substr. DH10B, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_011083:2847318*2847318291739170074Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,4e-1177.8BLASTN svgBLASTP svg
NC_012214:89720689720692299825793Erwinia pyrifoliae Ep1/96, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_012880:38273903827390385759930210Dickeya dadantii Ech703, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_015224:3225000*3225000325159926600Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,4e-1177.8BLASTN svgBLASTP svg
NC_003143:2433190*2433190245920626017Yersinia pestis CO92, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_004088:22272782227278224825620979Yersinia pestis KIM, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_005810:2180303*2180303220909928797Yersinia pestis biovar Microtus str. 91001, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_006155:2461262*2461262248869127430Yersinia pseudotuberculosis IP 32953, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_008149:1842500*1842500188064438145Yersinia pestis Nepal516, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_008150:1705152*1705152174460539454Yersinia pestis Antiqua, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010159:22523802252380227191719538Yersinia pestis Angola, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010465:22828742282874230925826385Yersinia pseudotuberculosis YPIII, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010634:2376245*2376245240318526941Yersinia pseudotuberculosis PB1/+, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_014500:2479814*2479814250755827745Dickeya dadantii 3937 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_003155:74539947453994748164227649Streptomyces avermitilis MA-4680, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_020063:31040003104000312597921980Enterobacteriaceae bacterium strain FGI 57, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_011080:28979772897977291952121545Salmonella enterica subsp. enterica serovar Newport str. SL254,9e-0969.9BLASTN svgBLASTP svg
NC_006905:28576992857699289909341395Salmonella enterica subsp. enterica serovar Choleraesuis str9e-0969.9BLASTN svgBLASTP svg
NC_003143:33468343346834337009923266Yersinia pestis CO92, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_004088:16229411622941164556522625Yersinia pestis KIM, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_005810:29053622905362292838523024Yersinia pestis biovar Microtus str. 91001, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_008149:15565811556581157548818908Yersinia pestis Nepal516, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_008150:24518722451872247509923228Yersinia pestis Antiqua, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010159:28784992878499290014121643Yersinia pestis Angola, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010465:15506171550617157325522639Yersinia pseudotuberculosis YPIII, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010634:31291743129174315220423031Yersinia pseudotuberculosis PB1/+, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_008570:3083850*3083850310907525226Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_014551:37970473797047382235125305Bacillus amyloliquefaciens DSM 7, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_020064:521500*52150055828736788Serratia marcescens FGI94, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_020260:3931567*3931567395659925033Cronobacter sakazakii Sp291, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_015061:4203767*4203767424223938473Rahnella sp. Y9602 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_010572:6463939*6463939649468830750Streptomyces griseus subsp. griseus NBRC 13350, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_004547:442927*44292748635443428Erwinia carotovora subsp. atroseptica SCRI1043, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_011149:1429523*1429523149808768565Salmonella enterica subsp. enterica serovar Agona str. SL483,2e-0661.9BLASTN svgBLASTP svg
NC_012880:16134851613485164274129257Dickeya dadantii Ech703, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_013592:2338403*2338403235809919697Dickeya dadantii Ech586, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_015566:69190*691909503025841Serratia sp. AS12 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_015567:69190*691909503025841Serratia sp. AS9 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_020064:3998715*3998715409080492090Serratia marcescens FGI94, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_020244:3856526*3856526387759921074Bacillus subtilis XF-1, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_015224:88953688953690956920034Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,9e-0660BLASTN svgBLASTP svg
NC_015224:3892972*3892972393636443393Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,9e-0660BLASTN svgBLASTP svg
NC_006155:32127963212796323445221657Yersinia pseudotuberculosis IP 32953, complete genome9e-0660BLASTN svgBLASTP svg
NC_004547:2285092*2285092230801122920Erwinia carotovora subsp. atroseptica SCRI1043, complete genome9e-0660BLASTN svgBLASTP svg
NC_004547:164000*16400019143427435Erwinia carotovora subsp. atroseptica SCRI1043, complete genome9e-0660BLASTN svgBLASTP svg