Pre_GI: BLASTN Hits

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Query: NC_012917:1923059 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 1923059, End: 1947695, Length: 24637

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_011080:92432692432694696322638Salmonella enterica subsp. enterica serovar Newport str. SL254,6e-131476BLASTN svgBLASTP svg
NC_010102:21785942178594220346224869Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,6e-131476BLASTN svgBLASTP svg
NC_003197:92000092000094439424395Salmonella typhimurium LT2, complete genome6e-131476BLASTN svgBLASTP svg
NC_006905:94641894641897214125724Salmonella enterica subsp. enterica serovar Choleraesuis str3e-126460BLASTN svgBLASTP svg
NC_020064:1611820*1611820163518523366Serratia marcescens FGI94, complete genome1e-125458BLASTN svgBLASTP svg
NC_011083:96726096726098909921840Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,2e-121444BLASTN svgBLASTP svg
NC_013508:2356865*2356865238859931735Edwardsiella tarda EIB202, complete genome4e-110406BLASTN svgBLASTP svg
NC_012779:2424967*2424967244959924633Edwardsiella ictaluri 93-146, complete genome2e-106394BLASTN svgBLASTP svg
NC_003143:16910001691000171055719558Yersinia pestis CO92, complete genome2e-69272BLASTN svgBLASTP svg
NC_004088:29370772937077296291925843Yersinia pestis KIM, complete genome2e-69272BLASTN svgBLASTP svg
NC_005810:15200001520000154409924100Yersinia pestis biovar Microtus str. 91001, complete genome2e-69272BLASTN svgBLASTP svg
NC_008149:27731392773139279513521997Yersinia pestis Nepal516, complete genome2e-69272BLASTN svgBLASTP svg
NC_008150:90500090500092909924100Yersinia pestis Antiqua, complete genome2e-69272BLASTN svgBLASTP svg
NC_010159:31692663169266318806418799Yersinia pestis Angola, complete genome2e-69272BLASTN svgBLASTP svg
NC_010465:28205002820500286978249283Yersinia pseudotuberculosis YPIII, complete genome2e-69272BLASTN svgBLASTP svg
NC_010634:18095001809500182909919600Yersinia pseudotuberculosis PB1/+, complete genome4e-67264BLASTN svgBLASTP svg
NC_006155:18079021807902182857520674Yersinia pseudotuberculosis IP 32953, complete genome4e-67264BLASTN svgBLASTP svg
NC_015224:17031301703130172897125842Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,7e-41176BLASTN svgBLASTP svg
NC_014306:49013904901390494640145012Erwinia billingiae Eb661, complete genome6e-32147BLASTN svgBLASTP svg
NC_012968:1352463*1352463137108218620Methylotenera mobilis JLW8, complete genome6e-26127BLASTN svgBLASTP svg
NC_009778:10700001070000109309923100Enterobacter sakazakii ATCC BAA-894, complete genome2e-25125BLASTN svgBLASTP svg
NC_012880:1765920*1765920184383077911Dickeya dadantii Ech703, complete genome4e-24121BLASTN svgBLASTP svg
NC_020260:1111130*1111130113509923970Cronobacter sakazakii Sp291, complete genome6e-23117BLASTN svgBLASTP svg
NC_015424:3112637*3112637318003367397Aeromonas veronii B565 chromosome, complete genome2e-22115BLASTN svgBLASTP svg
NC_015224:35875003587500361767930180Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,2e-22115BLASTN svgBLASTP svg
NC_015061:27708562770856279559924744Rahnella sp. Y9602 chromosome, complete genome9e-22113BLASTN svgBLASTP svg
NC_013421:20040882004088202439520308Pectobacterium wasabiae WPP163, complete genome9e-22113BLASTN svgBLASTP svg
NC_013592:1668092*1668092170683538744Dickeya dadantii Ech586, complete genome3e-21111BLASTN svgBLASTP svg
NC_003296:61200061200063500323004Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, complete2e-19105BLASTN svgBLASTP svg
NC_012917:29717022971702299359921898Pectobacterium carotovorum subsp. carotovorum PC1, complete genome3e-18101BLASTN svgBLASTP svg
NC_014121:20906302090630212903438405Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete8e-1693.7BLASTN svgBLASTP svg
NC_013421:4714478*4714478478002665549Pectobacterium wasabiae WPP163, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_014500:30717643071764309400622243Dickeya dadantii 3937 chromosome, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_012912:777592*77759280009922508Dickeya zeae Ech1591, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_014500:3023762*3023762306170037939Dickeya dadantii 3937 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_008309:1628939*1628939165295524017Haemophilus somnus 129PT, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_004347:4211241*4211241423643925199Shewanella oneidensis MR-1, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_009052:4437649*4437649446134423696Shewanella baltica OS155, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_009512:15181131518113155588037768Pseudomonas putida F1, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_014500:31752833175283321401838736Dickeya dadantii 3937 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_013956:44900004490000451370923710Pantoea ananatis LMG 20103 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_012779:36527373652737367609923363Edwardsiella ictaluri 93-146, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_013592:1056500*1056500108285526356Dickeya dadantii Ech586, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013592:1730505*1730505176316532661Dickeya dadantii Ech586, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_012880:2871480*2871480289700125522Dickeya dadantii Ech703, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_010002:37853133785313380809922787Delftia acidovorans SPH-1, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_008702:1094663*1094663111848823826Azoarcus sp. BH72, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_003295:3688000*3688000372599938000Ralstonia solanacearum GMI1000, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_007298:77872377872382009941377Dechloromonas aromatica RCB, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013508:35930003593000361400721008Edwardsiella tarda EIB202, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015061:3840463*3840463391463974177Rahnella sp. Y9602 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014910:42072274207227422797420748Alicycliphilus denitrificans BC chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_013282:18424121842412187000127590Cronobacter turicensis, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_012912:1788308*1788308184662758320Dickeya zeae Ech1591, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_008752:1523768*1523768154381320046Acidovorax avenae subsp. citrulli AAC00-1, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_008543:58212958212961104528917Burkholderia cenocepacia HI2424 chromosome 2, complete sequence7e-0763.9BLASTN svgBLASTP svg