Query: NC_012668:160357 Vibrio cholerae MJ-1236 chromosome 1, complete sequence
Start: 160357, End: 194860, Length: 34504
Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria
General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
---|
NC_015633:2919501 | 2919501 | 2943407 | 23907 | Vibrio anguillarum 775 chromosome chromosome I, complete sequence | 0 | 7000 | BLASTN svg | BLASTP svg |
NC_015633:2565753* | 2565753 | 2611599 | 45847 | Vibrio anguillarum 775 chromosome chromosome I, complete sequence | 0 | 2091 | BLASTN svg | BLASTP svg |
NC_007969:1664500 | 1664500 | 1685810 | 21311 | Psychrobacter cryohalolentis K5, complete genome | 6e-76 | 293 | BLASTN svg | BLASTP svg |
NC_015633:461143 | 461143 | 487633 | 26491 | Vibrio anguillarum 775 chromosome chromosome I, complete sequence | 8e-23 | 117 | BLASTN svg | BLASTP svg |
NC_015633:2327500* | 2327500 | 2357968 | 30469 | Vibrio anguillarum 775 chromosome chromosome I, complete sequence | 2e-20 | 109 | BLASTN svg | BLASTP svg |
NC_012779:996879 | 996879 | 1020375 | 23497 | Edwardsiella ictaluri 93-146, complete genome | 8e-20 | 107 | BLASTN svg | BLASTP svg |
NC_002505:860789 | 860789 | 889906 | 29118 | Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete | 3e-16 | 95.6 | BLASTN svg | BLASTP svg |
NC_013416:939668* | 939668 | 962707 | 23040 | Aggregatibacter actinomycetemcomitans D11S-1, complete genome | 5e-15 | 91.7 | BLASTN svg | BLASTP svg |
NC_015497:4564339 | 4564339 | 4588768 | 24430 | Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genome | 1e-12 | 83.8 | BLASTN svg | BLASTP svg |
NC_004459:2025436 | 2025436 | 2055246 | 29811 | Vibrio vulnificus CMCP6 chromosome I, complete sequence | 3e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_013416:820989* | 820989 | 845924 | 24936 | Aggregatibacter actinomycetemcomitans D11S-1, complete genome | 4e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_010334:609636* | 609636 | 637411 | 27776 | Shewanella halifaxensis HAW-EB4, complete genome | 2e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_015424:4251369* | 4251369 | 4276273 | 24905 | Aeromonas veronii B565 chromosome, complete genome | 1e-06 | 63.9 | BLASTN svg | BLASTP svg |
NC_009725:692237 | 692237 | 746599 | 54363 | Bacillus amyloliquefaciens FZB42, complete genome | 1e-06 | 63.9 | BLASTN svg | BLASTP svg |