Pre_GI: BLASTN Hits

Some Help

Query: NC_012488:732233 Listeria monocytogenes Clip81459, complete genome

Start: 732233, End: 753918, Length: 21686

Host Lineage: Listeria monocytogenes; Listeria; Listeriaceae; Bacillales; Firmicutes; Bacteria

General Information: During an outbreak of listeriosis aming patients with AIDS in California, USA in 1985. This organism, which causes listeriosis, is one of the leading causes of death from food-borne pathogens especially in pregnant women, newborns, the elderly, and immunocompromised individuals. It is found in environments such as decaying vegetable matter, sewage, water, and soil, and it can survive extremes of both temperatures (1-45 degrees C) and salt concentration marking it as an extremely dangerous food-born pathogen, especially on food that is not reheated. This organism is enteroinvasive, and utilizes an actin-based motility system by using a surface protein, ActA, that promotes actin polymerization, to spread intercellularly using the polymerized cytoskeletal protein as a "motor".




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_002973:73094273094275992628985Listeria monocytogenes str. 4b F2365, complete genome015890BLASTN svgBLASTP svg
NC_003210:72182472182474340121578Listeria monocytogenes EGD-e, complete genome010760BLASTN svgBLASTP svg
NC_003212:72111272111274471523604Listeria innocua Clip11262, complete genome010580BLASTN svgBLASTP svg
NC_008555:69621769621771552919313Listeria welshimeri serovar 6b str. SLCC5334, complete genome08681BLASTN svgBLASTP svg
NC_016011:67841967841969889020472Listeria ivanovii subsp. ivanovii PAM 55, complete genome05388BLASTN svgBLASTP svg
NC_013891:640784*64078466809927316Listeria seeligeri serovar 1/2b str. SLCC3954, complete genome03241BLASTN svgBLASTP svg
NC_011772:15756741575674159903823365Bacillus cereus G9842, complete genome3e-18101BLASTN svgBLASTP svg