Pre_GI: BLASTN Hits

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Query: NC_011769:3712497 Desulfovibrio vulgaris str. 'Miyazaki F', complete genome

Start: 3712497, End: 3732328, Length: 19832

Host Lineage: Desulfovibrio vulgaris; Desulfovibrio; Desulfovibrionaceae; Desulfovibrionales; Proteobacteria; Bacteria

General Information: Desulfovibrio vulgaris str. 'Miyazaki F' has one of the best characterized nickel/iron hydrogenases. A sulfate reducing bacterium. These organisms typically grow anaerobically, although some can tolerate oxygen, and they utilize a wide variety of electron acceptors, including sulfate, sulfur, nitrate, and nitrite. A number of toxic metals are reduced, including uranium (VI), chromium (VI) and iron (III), making these organisms of interest as bioremediators. Metal corrosion, a problem that is partly the result of the collective activity of these bacteria, produces billions of dollars in losses each year to the petroleum industry. These organisms are also responsible for the production of poisonous hydrogen sulfide gas in marine sediments and in terrestrial environments such as drilling sites for petroleum products. This species is a sulfate reducer commonly found in a variety of soil and aquatic environments.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_011883:1182000*1182000120391521916Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,2e-37165BLASTN svgBLASTP svg
NC_008260:29612912961291298426722977Alcanivorax borkumensis SK2, complete genome5e-29137BLASTN svgBLASTP svg
NC_015052:1771976*1771976180028328308Bifidobacterium longum subsp. infantis 157F, complete genome1e-23119BLASTN svgBLASTP svg
NC_013223:2609697*2609697264530735611Desulfohalobium retbaense DSM 5692, complete genome1e-23119BLASTN svgBLASTP svg
NC_010816:2326453*2326453235368827236Bifidobacterium longum DJO10A, complete genome1e-23119BLASTN svgBLASTP svg
NC_004307:2208591*2208591223691728327Bifidobacterium longum NCC2705, complete genome3e-21111BLASTN svgBLASTP svg
NC_015563:11294691129469116017830710Delftia sp. Cs1-4 chromosome, complete genome4e-20107BLASTN svgBLASTP svg
NC_008358:79839079839083934340954Hyphomonas neptunium ATCC 15444, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_009439:44289044289048900846119Pseudomonas mendocina ymp, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_021066:1712905*1712905175859645692Raoultella ornithinolytica B6, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_015593:203000*20300023519632197Sphingobium chlorophenolicum L-1 chromosome chromosome 1, complete4e-1487.7BLASTN svgBLASTP svg
NC_015312:3675148*3675148374606470917Pseudonocardia dioxanivorans CB1190 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_014972:10351241035124106227327150Desulfobulbus propionicus DSM 2032 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_015578:32668553266855328938922535Treponema primitia ZAS-2 chromosome, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_011769:78749678749681183124336Desulfovibrio vulgaris str. 'Miyazaki F', complete genome6e-1073.8BLASTN svgBLASTP svg
NC_007512:77197577197581463242658Pelodictyon luteolum DSM 273, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_007760:36554333655433369618740755Anaeromyxobacter dehalogenans 2CP-C, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015061:38019273801927382632824402Rahnella sp. Y9602 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015580:3779724*3779724380909429371Novosphingobium sp. PP1Y, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_010805:530876*53087656144030565Burkholderia multivorans ATCC 17616 chromosome 2, complete4e-0867.9BLASTN svgBLASTP svg
NC_014006:12045001204500122366719168Sphingobium japonicum UT26S chromosome 1, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_014828:2657623*2657623268107823456Ethanoligenens harbinense YUAN-3 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010086:1907959*1907959194027532317Burkholderia multivorans ATCC 17616 chromosome 2, complete4e-0867.9BLASTN svgBLASTP svg
NC_010634:2252329*2252329227409821770Yersinia pseudotuberculosis PB1/+, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_008150:15436351543635156595322319Yersinia pestis Antiqua, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_008149:16699211669921169183421914Yersinia pestis Nepal516, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_006155:23341222334122235510620985Yersinia pseudotuberculosis IP 32953, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_005810:20437302043730206409920370Yersinia pestis biovar Microtus str. 91001, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_004088:25410332541033256388322851Yersinia pestis KIM, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_003143:22586362258636227843519800Yersinia pestis CO92, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_015968:16188621618862164127522414Enterobacter asburiae LF7a chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_018750:3141196*3141196316047319278Streptomyces venezuelae ATCC 10712, complete genome9e-0660BLASTN svgBLASTP svg
NC_015385:2505977*2505977254990543929Treponema succinifaciens DSM 2489 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_014541:643604*64360466816624563Ferrimonas balearica DSM 9799 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_010473:24742924742927209924671Escherichia coli str. K-12 substr. DH10B, complete genome9e-0660BLASTN svgBLASTP svg
NC_009439:47342374734237475635022114Pseudomonas mendocina ymp, complete genome9e-0660BLASTN svgBLASTP svg
NC_008786:18688186884262323936Verminephrobacter eiseniae EF01-2, complete genome9e-0660BLASTN svgBLASTP svg
NC_000913:27207127207130179729727Escherichia coli K12, complete genome9e-0660BLASTN svgBLASTP svg
AC_000091:27332527332530179728473Escherichia coli W3110 DNA, complete genome9e-0660BLASTN svgBLASTP svg