Pre_GI: BLASTN Hits

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Query: NC_011769:3401353 Desulfovibrio vulgaris str. 'Miyazaki F', complete genome

Start: 3401353, End: 3425206, Length: 23854

Host Lineage: Desulfovibrio vulgaris; Desulfovibrio; Desulfovibrionaceae; Desulfovibrionales; Proteobacteria; Bacteria

General Information: Desulfovibrio vulgaris str. 'Miyazaki F' has one of the best characterized nickel/iron hydrogenases. A sulfate reducing bacterium. These organisms typically grow anaerobically, although some can tolerate oxygen, and they utilize a wide variety of electron acceptors, including sulfate, sulfur, nitrate, and nitrite. A number of toxic metals are reduced, including uranium (VI), chromium (VI) and iron (III), making these organisms of interest as bioremediators. Metal corrosion, a problem that is partly the result of the collective activity of these bacteria, produces billions of dollars in losses each year to the petroleum industry. These organisms are also responsible for the production of poisonous hydrogen sulfide gas in marine sediments and in terrestrial environments such as drilling sites for petroleum products. This species is a sulfate reducer commonly found in a variety of soil and aquatic environments.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_011883:48718748718751019523009Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,3e-49204BLASTN svgBLASTP svg
NC_013173:36793263679326373266253337Desulfomicrobium baculatum DSM 4028, complete genome4e-42180BLASTN svgBLASTP svg
NC_008781:3365468*3365468340127235805Polaromonas naphthalenivorans CJ2, complete genome2e-31145BLASTN svgBLASTP svg
NC_012691:22250002225000224630921310Tolumonas auensis DSM 9187, complete genome6e-26127BLASTN svgBLASTP svg
NC_011740:21351412135141215307917939Escherichia fergusonii ATCC 35469, complete genome4e-24121BLASTN svgBLASTP svg
NC_010814:15516241551624162182670203Geobacter lovleyi SZ, complete genome2e-22115BLASTN svgBLASTP svg
NC_002977:11984381198438121974121304Methylococcus capsulatus str. Bath, complete genome9e-22113BLASTN svgBLASTP svg
NC_010524:67421667421670822934014Leptothrix cholodnii SP-6, complete genome9e-22113BLASTN svgBLASTP svg
NC_010067:80712980712983359926471Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete8e-19103BLASTN svgBLASTP svg
NC_007908:1328832*1328832136532136490Rhodoferax ferrireducens T118, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_015138:10160001016000103760521606Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete2e-1695.6BLASTN svgBLASTP svg
NC_011901:2202690*2202690223230229613Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete8e-1693.7BLASTN svgBLASTP svg
NC_015966:22569432256943228043123489Rhodothermus marinus SG0.5JP17-172 chromosome, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_010172:4064087*4064087410309939013Methylobacterium extorquens PA1, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010725:4219500*4219500425012730628Methylobacterium populi BJ001, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_011894:6888562*6888562695715868597Methylobacterium nodulans ORS 2060, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_014844:659829*65982970618546357Desulfovibrio aespoeensis Aspo-2 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010524:25308412530841255411423274Leptothrix cholodnii SP-6, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_007517:1468719*1468719150798939271Geobacter metallireducens GS-15, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_013173:2884887*2884887293159946713Desulfomicrobium baculatum DSM 4028, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_014973:24300024300026234519346Geobacter sp. M18 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_012880:2871480*2871480289700125522Dickeya dadantii Ech703, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_011296:102650*10265012914226493Thermodesulfovibrio yellowstonii DSM 11347, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_008639:2968000*2968000302586557866Chlorobium phaeobacteroides DSM 266, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_008576:41300004130000415190421905Magnetococcus sp. MC-1, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_014831:65408*654088880223395Thermaerobacter marianensis DSM 12885 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_018868:1352000*1352000138222930230Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_013960:13193491319349133917819830Nitrosococcus halophilus Nc4 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_008702:39280433928043395047222430Azoarcus sp. BH72, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007519:28478162847816287465526840Desulfovibrio alaskensis G20 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007484:16718351671835169794126107Nitrosococcus oceani ATCC 19707, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_002696:2829002*2829002285565626655Caulobacter crescentus CB15, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_011386:2073726*2073726211598742262Oligotropha carboxidovorans OM5, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014100:533322*53332256190028579Caulobacter segnis ATCC 21756 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014394:13736021373602140662533024Gallionella capsiferriformans ES-2 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015684:2033985*2033985205409920115Oligotropha carboxidovorans OM5 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_012917:15060831506083154696940887Pectobacterium carotovorum subsp. carotovorum PC1, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_005070:41926141926147386554605Synechococcus sp. WH 8102, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_011060:51487451487456528450411Pelodictyon phaeoclathratiforme BU-1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013222:3060482*3060482308509924618Robiginitalea biformata HTCC2501, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013440:5509790*5509790553637126582Haliangium ochraceum DSM 14365, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014002:809678096712037639410Methanohalophilus mahii DSM 5219 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010337:61630461630464593229629Heliobacterium modesticaldum Ice1, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_015388:890008900011076621767Desulfobacca acetoxidans DSM 11109 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_016002:3704006*3704006373059326588Pseudogulbenkiania sp. NH8B, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_018876:2277160*2277160229993322774Methanolobus psychrophilus R15 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_020453:93639693639697628939894Agromonas oligotrophica S58 DNA, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_015672:399522*39952241941219891Flexistipes sinusarabici DSM 4947 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015578:3694813*3694813372039825586Treponema primitia ZAS-2 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015578:32668553266855328938922535Treponema primitia ZAS-2 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013959:2892660*2892660292827535616Sideroxydans lithotrophicus ES-1 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_004463:17725411772541179709924559Bradyrhizobium japonicum USDA 110, complete genome3e-0661.9BLASTN svgBLASTP svg