Pre_GI: BLASTN Hits

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Query: NC_011660:2509362 Listeria monocytogenes HCC23 chromosome, complete genome

Start: 2509362, End: 2532230, Length: 22869

Host Lineage: Listeria monocytogenes; Listeria; Listeriaceae; Bacillales; Firmicutes; Bacteria

General Information: Listeria monocytogenes HCC23 was isolated from channel catfish. This organism, which causes listeriosis, is one of the leading causes of death from food-borne pathogens especially in pregnant women, newborns, the elderly, and immunocompromised individuals. It is found in environments such as decaying vegetable matter, sewage, water, and soil, and it can survive extremes of both temperatures (1-45 degrees C) and salt concentration marking it as an extremely dangerous food-born pathogen, especially on food that is not reheated. This organism is enteroinvasive, and utilizes an actin-based motility system by using a surface protein, ActA, that promotes actin polymerization, to spread intercellularly using the polymerized cytoskeletal protein as a "motor". There are 13 serovars associated with Listeria monocytogenes, and the serovar 4b strains are more commonly associated with invasive disease.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008555:44492744492747035525429Listeria welshimeri serovar 6b str. SLCC5334, complete genome01376BLASTN svgBLASTP svg
NC_013891:57574657574659606620321Listeria seeligeri serovar 1/2b str. SLCC3954, complete genome01310BLASTN svgBLASTP svg
NC_010723:13792561379256140062221367Clostridium botulinum E3 str. Alaska E43, complete genome1e-54222BLASTN svgBLASTP svg
NC_008261:96797396797398863520663Clostridium perfringens ATCC 13124, complete genome3e-49204BLASTN svgBLASTP svg
NC_015975:1936504*1936504196101924516Lactobacillus ruminis ATCC 27782 chromosome, complete genome3e-40174BLASTN svgBLASTP svg
NC_013192:469771*46977149651726747Leptotrichia buccalis DSM 1135, complete genome2e-22115BLASTN svgBLASTP svg
NC_005362:1870620*1870620189402323404Lactobacillus johnsonii NCC 533, complete genome3e-18101BLASTN svgBLASTP svg
NC_003210:87058787058788950218916Listeria monocytogenes EGD-e, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_008530:1775841*1775841179784122001Lactobacillus gasseri ATCC 33323, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_006814:403723*40372344563241910Lactobacillus acidophilus NCFM, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_018528:1681060*1681060170729126232Lactobacillus helveticus R0052 chromosome, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_015214:437733*43773348259944867Lactobacillus acidophilus 30SC chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_014724:439594*43959448564446051Lactobacillus amylovorus GRL 1112 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_014106:419511*41951145680837298Lactobacillus crispatus ST1, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_015602:1339067*1339067136576626700Lactobacillus kefiranofaciens ZW3 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_013171:228356*22835625488926534Anaerococcus prevotii DSM 20548, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_020207:17959931795993181911423122Enterococcus faecium NRRL B-2354, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_011830:3081726*3081726310214720422Desulfitobacterium hafniense DCB-2, complete genome3e-0661.9BLASTN svgBLASTP svg