Pre_GI: BLASTN Hits

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Query: NC_009480:703102 Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete

Start: 703102, End: 727175, Length: 24074

Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Phytopathogen that causes bacterial wilt and canker of tomato (Lycopersicon esculentum). This is considered to be the most important bacterial disease of tomato causing substantial economic losses worldwide. Bacteria enter the plant by wounds on root or stem and then find their way into the xylem allowing a massive systemic colonization. The first stage of the disease is characterized by unilateral wilting of leaves. Wilting then spreads to all leaves, canker lesions develop on the stem and the plant dies. If infection occurs at a late stage of plant development, plants can survive and yield fruit that may have spots, so called bird's eyes. Often the seeds will be infected and this has been the major source for outbreaks of Clavibacter michiganensis subsp. michiganensis infections in agriculture. Members of the Clavibacter genus are known to produce antimicrobial compounds.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013169:1545890*1545890156556719678Kytococcus sedentarius DSM 20547, complete genome2e-65258BLASTN svgBLASTP svg
NC_013595:68314806831480685414322664Streptosporangium roseum DSM 43021, complete genome1e-57232BLASTN svgBLASTP svg
NC_018681:441014*44101447306232049Nocardia brasiliensis ATCC 700358 chromosome, complete genome2e-35159BLASTN svgBLASTP svg
NC_013131:5226919*5226919525205225134Catenulispora acidiphila DSM 44928, complete genome2e-32149BLASTN svgBLASTP svg
NC_014210:72371972371974915525437Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,1e-23119BLASTN svgBLASTP svg
NC_015312:61752*617528144419693Pseudonocardia dioxanivorans CB1190 chromosome, complete genome2e-22115BLASTN svgBLASTP svg
NC_013510:12954391295439131735721919Thermomonospora curvata DSM 43183, complete genome8e-19103BLASTN svgBLASTP svg
NC_007777:39620003962000397994117942Frankia sp. CcI3, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_019673:6298342*6298342632793229591Saccharothrix espanaensis DSM 44229 complete genome2e-0765.9BLASTN svgBLASTP svg