Pre_GI: BLASTN Hits

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Query: NC_009439:2038303 Pseudomonas mendocina ymp, complete genome

Start: 2038303, End: 2068239, Length: 29937

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015410:2144387*2144387217909934713Pseudomonas mendocina NK-01 chromosome, complete genome07384BLASTN svgBLASTP svg
NC_009439:49137674913767493609922333Pseudomonas mendocina ymp, complete genome02819BLASTN svgBLASTP svg
NC_009439:12978511297851133481436964Pseudomonas mendocina ymp, complete genome02819BLASTN svgBLASTP svg
NC_009439:860571*86057188549124921Pseudomonas mendocina ymp, complete genome02813BLASTN svgBLASTP svg
NC_009439:44289044289048900846119Pseudomonas mendocina ymp, complete genome02813BLASTN svgBLASTP svg
NC_009439:37702823770282380177231491Pseudomonas mendocina ymp, complete genome02813BLASTN svgBLASTP svg
NC_009439:3394174*3394174341925525082Pseudomonas mendocina ymp, complete genome02813BLASTN svgBLASTP svg
NC_011770:2046490*2046490207050324014Pseudomonas aeruginosa LESB58, complete genome02097BLASTN svgBLASTP svg
NC_008463:2017607*2017607204360726001Pseudomonas aeruginosa UCBPP-PA14, complete genome02089BLASTN svgBLASTP svg
NC_008027:1559083*1559083158236923287Pseudomonas entomophila L48, complete genome02050BLASTN svgBLASTP svg
NC_015733:1555476*1555476160259947124Pseudomonas putida S16 chromosome, complete genome01963BLASTN svgBLASTP svg
NC_015379:1887275*1887275191854531271Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,01671BLASTN svgBLASTP svg
NC_020209:997385*997385104138844004Pseudomonas poae RE*1-1-14, complete genome01540BLASTN svgBLASTP svg
NC_004129:4993974*4993974502072326750Pseudomonas fluorescens Pf-5, complete genome01540BLASTN svgBLASTP svg
NC_012660:1804610*1804610183512430515Pseudomonas fluorescens SBW25 chromosome, complete genome01522BLASTN svgBLASTP svg
NC_004129:5846415*5846415588159935185Pseudomonas fluorescens Pf-5, complete genome0844BLASTN svgBLASTP svg
NC_018868:569423*56942361904449622Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genome1e-178634BLASTN svgBLASTP svg
NC_012997:1446037*1446037147363527599Teredinibacter turnerae T7901, complete genome3e-130474BLASTN svgBLASTP svg
NC_008702:1153344*1153344117844425101Azoarcus sp. BH72, complete genome5e-70274BLASTN svgBLASTP svg
NC_002516:35190003519000354507426075Pseudomonas aeruginosa PAO1, complete genome8e-69270BLASTN svgBLASTP svg
NC_008314:36500365005712620627Ralstonia eutropha H16 chromosome 2, complete sequence4e-52214BLASTN svgBLASTP svg
NC_008782:31674403167440322216554726Acidovorax sp. JS42, complete genome2e-51212BLASTN svgBLASTP svg
NC_007492:45639814563981458949625516Pseudomonas fluorescens PfO-1, complete genome2e-47198BLASTN svgBLASTP svg
NC_009654:3215205*3215205324567930475Marinomonas sp. MWYL1, complete genome3e-40174BLASTN svgBLASTP svg
NC_014931:5088125*5088125512272134597Variovorax paradoxus EPS chromosome, complete genome3e-37165BLASTN svgBLASTP svg
NC_014323:4792048*4792048483609944052Herbaspirillum seropedicae SmR1 chromosome, complete genome3e-37165BLASTN svgBLASTP svg
NC_008781:33029343302934332709924166Polaromonas naphthalenivorans CJ2, complete genome8e-35157BLASTN svgBLASTP svg
NC_008752:10259801025980106353637557Acidovorax avenae subsp. citrulli AAC00-1, complete genome1e-33153BLASTN svgBLASTP svg
NC_012791:20529232052923208497632054Variovorax paradoxus S110 chromosome 1, complete genome5e-33151BLASTN svgBLASTP svg
NC_021150:15642291564229159503430806Azotobacter vinelandii CA6, complete genome5e-33151BLASTN svgBLASTP svg
NC_018691:18227311822731185319130461Alcanivorax dieselolei B5 chromosome, complete genome2e-29139BLASTN svgBLASTP svg
NC_014394:30367583036758307034433587Gallionella capsiferriformans ES-2 chromosome, complete genome1e-24123BLASTN svgBLASTP svg
NC_019902:626934*62693464909922166Thioalkalivibrio nitratireducens DSM 14787, complete genome2e-20109BLASTN svgBLASTP svg
NC_010524:1005355*1005355103237727023Leptothrix cholodnii SP-6, complete genome3e-19105BLASTN svgBLASTP svg
NC_008781:2925818*2925818294540419587Polaromonas naphthalenivorans CJ2, complete genome3e-19105BLASTN svgBLASTP svg
NC_009720:2489003*2489003251980530803Xanthobacter autotrophicus Py2, complete genome4e-18101BLASTN svgBLASTP svg
NC_009138:11389171138917117310234186Herminiimonas arsenicoxydans, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_012560:15645001564500159380029301Azotobacter vinelandii DJ, complete genome3e-1695.6BLASTN svgBLASTP svg
NC_015711:6522808*6522808656473541928Myxococcus fulvus HW-1 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_011146:3720658*3720658375266832011Geobacter bemidjiensis Bem, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_007963:19089641908964193444325480Chromohalobacter salexigens DSM 3043, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_006513:34865583486558351342826871Azoarcus sp. EbN1, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_002939:24546862454686247498020295Geobacter sulfurreducens PCA, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_014958:31311913131191315796026770Deinococcus maricopensis DSM 21211 chromosome, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_015388:26930126930131222342923Desulfobacca acetoxidans DSM 11109 chromosome, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_012808:58701*587018490626206Methylobacterium extorquens AM1, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_011757:97281*9728112674229462Methylobacterium chloromethanicum CM4, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_010814:15516241551624162182670203Geobacter lovleyi SZ, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_011979:1590432*1590432162467634245Geobacter sp. FRC-32, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014532:15794191579419162013440716Halomonas elongata DSM 2581, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_014550:33778343377834343359955766Arthrobacter arilaitensis Re117, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_015145:26937492693749273661842870Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_015424:3112637*3112637318003367397Aeromonas veronii B565 chromosome, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_019892:3086493*3086493310858222090Singulisphaera acidiphila DSM 18658 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_012559:2663747*2663747271401150265Laribacter hongkongensis HLHK9, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007958:830000*83000086140231403Rhodopseudomonas palustris BisB5, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009654:89449289449291290618415Marinomonas sp. MWYL1, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_007969:72608672608675476528680Psychrobacter cryohalolentis K5, complete genome4e-0661.9BLASTN svgBLASTP svg