Query: NC_009012:1901492 Clostridium thermocellum ATCC 27405, complete genome
Start: 1901492, End: 1923064, Length: 21573
Host Lineage: Clostridium thermocellum; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria
General Information: This strain is a well studied producer of endoglucanase and several restriction endonucleases. Thermophilic cellulose degrading bacterium. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a thermophilic anaerobe that produces an extracellular enzyme system capable of degrading crystalline cellulose to soluble sugars that are further utilized as the carbon source for growth.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_015687:279641 | 279641 | 302196 | 22556 | Clostridium acetobutylicum DSM 1731 chromosome, complete genome | 1e-29 | 139 | BLASTN svg | BLASTP svg |
NC_003030:279643 | 279643 | 302198 | 22556 | Clostridium acetobutylicum ATCC 824, complete genome | 1e-29 | 139 | BLASTN svg | BLASTP svg |
NC_020389:714178 | 714178 | 737073 | 22896 | Methanosarcina mazei Tuc01, complete genome | 8e-28 | 133 | BLASTN svg | BLASTP svg |
NC_003901:860242 | 860242 | 884099 | 23858 | Methanosarcina mazei Go1, complete genome | 2e-25 | 125 | BLASTN svg | BLASTP svg |
NC_014328:2588994 | 2588994 | 2606993 | 18000 | Clostridium ljungdahlii ATCC 49587 chromosome, complete genome | 7e-19 | 103 | BLASTN svg | BLASTP svg |
NC_014328:522045 | 522045 | 545160 | 23116 | Clostridium ljungdahlii ATCC 49587 chromosome, complete genome | 1e-17 | 99.6 | BLASTN svg | BLASTP svg |
NC_003552:4782635 | 4782635 | 4807599 | 24965 | Methanosarcina acetivorans C2A, complete genome | 1e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_021182:3438601 | 3438601 | 3460260 | 21660 | Clostridium pasteurianum BC1, complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_012225:1015452 | 1015452 | 1039343 | 23892 | Brachyspira hyodysenteriae WA1, complete genome | 4e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_021182:1077721 | 1077721 | 1096397 | 18677 | Clostridium pasteurianum BC1, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_014150:2088012* | 2088012 | 2121099 | 33088 | Brachyspira murdochii DSM 12563 chromosome, complete genome | 7e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_009437:2579161 | 2579161 | 2622924 | 43764 | Caldicellulosiruptor saccharolyticus DSM 8903, complete genome | 7e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_014166:33138* | 33138 | 56041 | 22904 | Arcobacter nitrofigilis DSM 7299 chromosome, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_015636:1123053 | 1123053 | 1146237 | 23185 | Methanothermococcus okinawensis IH1 chromosome, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_015500:78223 | 78223 | 105600 | 27378 | Treponema brennaborense DSM 12168 chromosome, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |