Pre_GI: BLASTN Hits

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Query: NC_008269:428898 Rhodococcus sp. RHA1 plasmid pRHL1, complete sequence

Start: 428898, End: 452599, Length: 23702

Host Lineage: Rhodococcus jostii; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. Polychlorinated biphenyl degrading bacterium. Rhodococcus jostii is capable of degrading a wide variety of polychlorinated biphenyls (PCBs), which are toxic compounds produced by industry, and is studied extensively for this reason. This microbe is being examined thoroughly under different environmental conditions in order to better understand metabolic pathways and gene functions.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_012522:985679856712209923533Rhodococcus opacus B4, complete genome0668BLASTN svgBLASTP svg
NC_008268:74857107485710750851722808Rhodococcus sp. RHA1, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_008268:17486351748635177239623762Rhodococcus sp. RHA1, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_008271:14084614084616654625701Rhodococcus sp. RHA1 plasmid pRHL3, complete sequence5e-1177.8BLASTN svgBLASTP svg
NC_007164:54765454765457047722824Corynebacterium jeikeium K411, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_019673:37265193726519374519118673Saccharothrix espanaensis DSM 44229 complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013743:1450417*1450417147310922693Haloterrigena turkmenica DSM 5511, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_012856:112296322963Ralstonia pickettii 12D chromosome 1, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_008825:25649652564965258966024696Methylibium petroleiphilum PM1, complete genome3e-0661.9BLASTN svgBLASTP svg