Pre_GI: BLASTN Hits

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Query: NC_008268:3233961 Rhodococcus sp. RHA1, complete genome

Start: 3233961, End: 3259592, Length: 25632

Host Lineage: Rhodococcus jostii; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. Polychlorinated biphenyl degrading bacterium. Rhodococcus jostii is capable of degrading a wide variety of polychlorinated biphenyls (PCBs), which are toxic compounds produced by industry, and is studied extensively for this reason. This microbe is being examined thoroughly under different environmental conditions in order to better understand metabolic pathways and gene functions.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008268:71806637180663722188141219Rhodococcus sp. RHA1, complete genome9e-1693.7BLASTN svgBLASTP svg
NC_007722:21720002172000219518323184Erythrobacter litoralis HTCC2594, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_008699:37755613775561380004924489Nocardioides sp. JS614, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010002:33577523357752338379626045Delftia acidovorans SPH-1, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_008740:3520500*3520500356433043831Marinobacter aquaeolei VT8, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_008595:17923181792318181084718530Mycobacterium avium 104, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_015138:765497*76549779476529269Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete3e-0971.9BLASTN svgBLASTP svg
NC_013442:658665864509938514Gordonia bronchialis DSM 43247 plasmid pGBRO01, complete sequence8e-0763.9BLASTN svgBLASTP svg