Pre_GI: BLASTN Hits

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Query: NC_008262:419726 Clostridium perfringens SM101, complete genome

Start: 419726, End: 440602, Length: 20877

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a enterotoxin-producing food poisoning strain. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008261:421000*42100043770016701Clostridium perfringens ATCC 13124, complete genome05297BLASTN svgBLASTP svg
NC_003366:461602*46160248435522754Clostridium perfringens str. 13, complete genome02585BLASTN svgBLASTP svg
NC_008262:38132338132340409922777Clostridium perfringens SM101, complete genome01425BLASTN svgBLASTP svg
NC_008262:2598920*2598920264903950120Clostridium perfringens SM101, complete genome01415BLASTN svgBLASTP svg
NC_008262:2649289*2649289270467655388Clostridium perfringens SM101, complete genome01403BLASTN svgBLASTP svg
NC_008262:297960*29796032314425185Clostridium perfringens SM101, complete genome01396BLASTN svgBLASTP svg
NC_010520:3674883*3674883369898424102Clostridium botulinum A3 str. Loch Maree, complete genome7e-22113BLASTN svgBLASTP svg
NC_010674:13904731390473141116620694Clostridium botulinum B str. Eklund 17B, complete genome3e-18101BLASTN svgBLASTP svg
NC_004557:691944*69194471563123688Clostridium tetani E88, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_020134:1173000*1173000119554722548Clostridium stercorarium subsp. stercorarium DSM 8532, complete4e-0867.9BLASTN svgBLASTP svg
NC_020134:20500020500022458619587Clostridium stercorarium subsp. stercorarium DSM 8532, complete4e-0867.9BLASTN svgBLASTP svg
NC_009012:3204696*3204696322373319038Clostridium thermocellum ATCC 27405, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_014328:34829803482980351005727078Clostridium ljungdahlii ATCC 49587 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_014393:503230*50323052309919870Clostridium cellulovorans 743B chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg