Pre_GI: BLASTN Hits

Some Help

Query: NC_008228:3841897 Pseudoalteromonas atlantica T6c, complete genome

Start: 3841897, End: 3860157, Length: 18261

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015497:12878771287877133880050924Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genome01223BLASTN svgBLASTP svg
NC_009832:2969376*2969376299269223317Serratia proteamaculans 568, complete genome1e-35159BLASTN svgBLASTP svg
NC_009778:14778411477841150009922259Enterobacter sakazakii ATCC BAA-894, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_020260:1535394*1535394155809922706Cronobacter sakazakii Sp291, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_015061:2867027*2867027288717520149Rahnella sp. Y9602 chromosome, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_014306:2703544*2703544272704423501Erwinia billingiae Eb661, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_015633:2327500*2327500235796830469Vibrio anguillarum 775 chromosome chromosome I, complete sequence1e-0765.9BLASTN svgBLASTP svg
NC_009848:31906193190619321885828240Bacillus pumilus SAFR-032, complete genome8e-0660BLASTN svgBLASTP svg