Pre_GI: BLASTN Hits

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Query: NC_008148:1711679 Rubrobacter xylanophilus DSM 9941, complete genome

Start: 1711679, End: 1731962, Length: 20284

Host Lineage: Rubrobacter xylanophilus; Rubrobacter; Rubrobacteraceae; Rubrobacterales; Actinobacteria; Bacteria

General Information: Cellulose-degrading bacterium. This genus contains two species: Rubrobacter radiotolerans and Rubrobacter xylanophilus. These two species represent the oldest lineage (deepest branch) of the Actinobacteria and are distantly related to Mycobacteria and Streptomycetes. Both species are thermophilic and exhibit high tolerance to radiation. Very little research has been done on these organisms and little is known other than their taxonomic characterization. Rubrobacter xylanophilus was isolated from a thermally polluted industrial runoff in the United Kingdom. Some strains of this species are capable of degrading hemicellulose and xylan (polymers of plant origin), and could play a significant role in the degradation of these compounds in the wood and paper industry as well as in the environment.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008702:33750273375027339883123805Azoarcus sp. BH72, complete genome6e-81309BLASTN svgBLASTP svg
NC_008313:21423972142397216633723941Ralstonia eutropha H16 chromosome 1, complete sequence6e-75289BLASTN svgBLASTP svg
NC_007958:396439*39643942143724999Rhodopseudomonas palustris BisB5, complete genome3e-55224BLASTN svgBLASTP svg
NC_005296:2860000*2860000288492224923Rhodopseudomonas palustris CGA009, complete genome3e-49204BLASTN svgBLASTP svg
NC_002678:48591114859111488349624386Mesorhizobium loti MAFF303099, complete genome1e-32149BLASTN svgBLASTP svg
NC_007802:10937851093785111634222558Jannaschia sp. CCS1, complete genome5e-26127BLASTN svgBLASTP svg
NC_008700:1627401*1627401165612228722Shewanella amazonensis SB2B, complete genome8e-25123BLASTN svgBLASTP svg
NC_014924:25170682517068254012823061Pseudoxanthomonas suwonensis 11-1 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_011992:19682581968258199851030253Acidovorax ebreus TPSY, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_007626:69792669792672542027495Magnetospirillum magneticum AMB-1, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_020126:5152359*5152359517395921601Myxococcus stipitatus DSM 14675, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010397:20635612063561208701523455Mycobacterium abscessus chromosome Chromosome, complete sequence2e-1075.8BLASTN svgBLASTP svg
NC_019673:2635585*2635585265953723953Saccharothrix espanaensis DSM 44229 complete genome6e-1073.8BLASTN svgBLASTP svg
NC_008786:26695926695929188324925Verminephrobacter eiseniae EF01-2, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_013204:29555002955500298012224623Eggerthella lenta DSM 2243, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_014323:992978992978103436141384Herbaspirillum seropedicae SmR1 chromosome, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_015666:1849618*1849618187832428707Halopiger xanaduensis SH-6 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_015594:41045441045445109940646Sphingobium chlorophenolicum L-1 chromosome chromosome 2, complete4e-0867.9BLASTN svgBLASTP svg
NC_008701:19585019585025800262153Pyrobaculum islandicum DSM 4184, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_008789:7347*73473054023194Halorhodospira halophila SL1, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_018868:3036205*3036205307547539271Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_007963:2555012*2555012257573920728Chromohalobacter salexigens DSM 3043, complete genome9e-0660BLASTN svgBLASTP svg
NC_008786:27296352729635277134341709Verminephrobacter eiseniae EF01-2, complete genome9e-0660BLASTN svgBLASTP svg
NC_009512:32825003282500331588733388Pseudomonas putida F1, complete genome9e-0660BLASTN svgBLASTP svg
NC_009921:43990004399000442459925600Frankia sp. EAN1pec, complete genome9e-0660BLASTN svgBLASTP svg
NC_010612:3745332*3745332378131835987Mycobacterium marinum M, complete genome9e-0660BLASTN svgBLASTP svg
NC_011886:17703917703920120524167Arthrobacter chlorophenolicus A6, complete genome9e-0660BLASTN svgBLASTP svg
NC_012590:63765163765166603928389Corynebacterium aurimucosum ATCC 700975, complete genome9e-0660BLASTN svgBLASTP svg
NC_012792:10916691091669111509923431Variovorax paradoxus S110 chromosome 2, complete genome9e-0660BLASTN svgBLASTP svg
NC_014323:27327273274647019144Herbaspirillum seropedicae SmR1 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_005085:24623246234912724505Chromobacterium violaceum ATCC 12472, complete genome9e-0660BLASTN svgBLASTP svg