Pre_GI: BLASTN Hits

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Query: NC_007953:1434705 Burkholderia xenovorans LB400 chromosome 3, complete sequence

Start: 1434705, End: 1458122, Length: 23418

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015376:11850001185000120456219563Burkholderia gladioli BSR3 chromosome chromosome 2, complete0852BLASTN svgBLASTP svg
NC_010676:30099803009980304723937260Burkholderia phytofirmans PsJN chromosome 2, complete sequence7e-115422BLASTN svgBLASTP svg
NC_010501:34483893448389347837429986Pseudomonas putida W619, complete genome3e-83317BLASTN svgBLASTP svg
NC_008391:86534086534088883923500Burkholderia cepacia AMMD chromosome 2, complete sequence1e-48202BLASTN svgBLASTP svg
NC_008543:58212958212961104528917Burkholderia cenocepacia HI2424 chromosome 2, complete sequence1e-36163BLASTN svgBLASTP svg
NC_014532:20660742066074209060724534Halomonas elongata DSM 2581, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_003911:25404532540453256752127069Silicibacter pomeroyi DSS-3, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_006569:37084637084639013419289Silicibacter pomeroyi DSS-3 megaplasmid, complete sequence7e-0763.9BLASTN svgBLASTP svg
NC_010676:26584952658495270919750703Burkholderia phytofirmans PsJN chromosome 2, complete sequence3e-0661.9BLASTN svgBLASTP svg