Pre_GI: BLASTN Hits

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Query: NC_007952:495000 Burkholderia xenovorans LB400 chromosome 2, complete sequence

Start: 495000, End: 513941, Length: 18942

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_007974:2048000*2048000209210744108Ralstonia metallidurans CH34 chromosome 2, complete sequence6e-1693.7BLASTN svgBLASTP svg
NC_008009:1264791*1264791129091226122Acidobacteria bacterium Ellin345, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_007511:33713193371319339850027182Burkholderia sp. 383 chromosome 2, complete sequence1e-1075.8BLASTN svgBLASTP svg
NC_010551:1462827*1462827148416621340Burkholderia ambifaria MC40-6 chromosome 1, complete sequence9e-0969.9BLASTN svgBLASTP svg
NC_007510:19212511921251195127630026Burkholderia sp. 383 chromosome 1, complete sequence4e-0867.9BLASTN svgBLASTP svg
NC_015259:485015*48501556418379169Polymorphum gilvum SL003B-26A1 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_010625:22947822947825334123864Burkholderia phymatum STM815 plasmid pBPHY01, complete sequence2e-0661.9BLASTN svgBLASTP svg