Query: NC_007951:1768236 Burkholderia xenovorans LB400 chromosome 1, complete sequence
Start: 1768236, End: 1796664, Length: 28429
Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria
General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_015376:1431728 | 1431728 | 1451641 | 19914 | Burkholderia gladioli BSR3 chromosome chromosome 2, complete | 5e-36 | 161 | BLASTN svg | BLASTP svg |
NC_007434:1322500 | 1322500 | 1354599 | 32100 | Burkholderia pseudomallei 1710b chromosome I, complete sequence | 3e-34 | 155 | BLASTN svg | BLASTP svg |
NC_009076:1102500 | 1102500 | 1124599 | 22100 | Burkholderia pseudomallei 1106a chromosome I, complete sequence | 7e-32 | 147 | BLASTN svg | BLASTP svg |
NC_009074:1092000 | 1092000 | 1112224 | 20225 | Burkholderia pseudomallei 668 chromosome I, complete sequence | 7e-32 | 147 | BLASTN svg | BLASTP svg |
NC_007651:3064530* | 3064530 | 3173670 | 109141 | Burkholderia thailandensis E264 chromosome I, complete sequence | 3e-31 | 145 | BLASTN svg | BLASTP svg |
NC_007435:191821* | 191821 | 222695 | 30875 | Burkholderia pseudomallei 1710b chromosome II, complete sequence | 3e-31 | 145 | BLASTN svg | BLASTP svg |
NC_003295:921256 | 921256 | 947099 | 25844 | Ralstonia solanacearum GMI1000, complete genome | 7e-26 | 127 | BLASTN svg | BLASTP svg |
NC_012721:2223641 | 2223641 | 2248599 | 24959 | Burkholderia glumae BGR1 chromosome 2, complete genome | 4e-24 | 121 | BLASTN svg | BLASTP svg |
NC_003296:673790 | 673790 | 726099 | 52310 | Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, complete | 4e-24 | 121 | BLASTN svg | BLASTP svg |
NC_008391:639996 | 639996 | 661603 | 21608 | Burkholderia cepacia AMMD chromosome 2, complete sequence | 7e-23 | 117 | BLASTN svg | BLASTP svg |
NC_010551:415487 | 415487 | 440510 | 25024 | Burkholderia ambifaria MC40-6 chromosome 1, complete sequence | 4e-21 | 111 | BLASTN svg | BLASTP svg |
NC_015377:86847 | 86847 | 112714 | 25868 | Burkholderia gladioli BSR3 plasmid bgla_2p, complete sequence | 6e-17 | 97.6 | BLASTN svg | BLASTP svg |
NC_009076:3765441 | 3765441 | 3801670 | 36230 | Burkholderia pseudomallei 1106a chromosome I, complete sequence | 6e-17 | 97.6 | BLASTN svg | BLASTP svg |
NC_007435:1446916 | 1446916 | 1491700 | 44785 | Burkholderia pseudomallei 1710b chromosome II, complete sequence | 1e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_009078:2718741 | 2718741 | 2763430 | 44690 | Burkholderia pseudomallei 1106a chromosome II, complete sequence | 9e-13 | 83.8 | BLASTN svg | BLASTP svg |
NC_006351:2759708 | 2759708 | 2806207 | 46500 | Burkholderia pseudomallei K96243 chromosome 2, complete sequence | 6e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_015376:3631392 | 3631392 | 3651074 | 19683 | Burkholderia gladioli BSR3 chromosome chromosome 2, complete | 9e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_010682:1 | 1 | 24747 | 24747 | Ralstonia pickettii 12J chromosome 1, complete sequence | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |