Pre_GI: BLASTN Hits

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Query: NC_007951:1042291 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 1042291, End: 1068997, Length: 26707

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010676:26584952658495270919750703Burkholderia phytofirmans PsJN chromosome 2, complete sequence01427BLASTN svgBLASTP svg
NC_010627:12796812796815040322436Burkholderia phymatum STM815 plasmid pBPHY02, complete sequence6e-51210BLASTN svgBLASTP svg
NC_007509:366836686033156664Burkholderia sp. 383 chromosome 3, complete sequence5e-42180BLASTN svgBLASTP svg
NC_010627:53240753240755414621740Burkholderia phymatum STM815 plasmid pBPHY02, complete sequence1e-1799.6BLASTN svgBLASTP svg
NC_010508:18656021865602188921923618Burkholderia cenocepacia MC0-3 chromosome 1, complete sequence6e-1797.6BLASTN svgBLASTP svg
NC_010805:530876*53087656144030565Burkholderia multivorans ATCC 17616 chromosome 2, complete6e-1797.6BLASTN svgBLASTP svg
NC_010086:1907959*1907959194027532317Burkholderia multivorans ATCC 17616 chromosome 2, complete6e-1797.6BLASTN svgBLASTP svg
NC_003296:26211826211828615024033Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, complete2e-1385.7BLASTN svgBLASTP svg
NC_003295:11277811277813226319486Ralstonia solanacearum GMI1000, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_012791:23860002386000240897722978Variovorax paradoxus S110 chromosome 1, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_010623:725007250010462732128Burkholderia phymatum STM815 chromosome 2, complete sequence1e-0869.9BLASTN svgBLASTP svg
NC_003296:55683655683661181954984Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, complete8e-0763.9BLASTN svgBLASTP svg