Pre_GI: BLASTN Hits

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Query: NC_007604:743738 Synechococcus elongatus PCC 7942, complete genome

Start: 743738, End: 768626, Length: 24889

Host Lineage: Synechococcus elongatus; Synechococcus; Synechococcaceae; Chroococcales; Cyanobacteria; Bacteria

General Information: This strain is a freshwater organism and is extensively studied due to its circadian clock which controls the expression of upwards of 800 genes during a 24 hour period. These unicellular cyanobacteria are also known as blue green algae and along with Prochlorococcus are responsible for a large part of the carbon fixation that occurs in marine environments. Synechococcus have a broader distribution in the ocean and are less abundant in oligotrophic (low nutrient) regions. These organism utilize photosystem I and II to capture light energy. They are highly adapted to marine environments and some strains have evolved unique motility systems in order to propel themselves towards areas that contain nitrogenous compounds. An obligate photoautotroph, it has been studied extensively by an international research community with respect to acquisition of organic carbon, transport and regulation of nitrogen compounds, adaptation to nutrient stresses, and reponse to light intensity.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_006576:85601485601488271226699Synechococcus elongatus PCC 6301, complete genome041570BLASTN svgBLASTP svg
NC_010296:5002428*5002428502497722550Microcystis aeruginosa NIES-843, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_011979:2892119*2892119291613624018Geobacter sp. FRC-32, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014355:66500066500068537120372Candidatus Nitrospira defluvii, complete genome3e-0661.9BLASTN svgBLASTP svg