Pre_GI: BLASTN Hits

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Query: NC_007604:1875268 Synechococcus elongatus PCC 7942, complete genome

Start: 1875268, End: 1897163, Length: 21896

Host Lineage: Synechococcus elongatus; Synechococcus; Synechococcaceae; Chroococcales; Cyanobacteria; Bacteria

General Information: This strain is a freshwater organism and is extensively studied due to its circadian clock which controls the expression of upwards of 800 genes during a 24 hour period. These unicellular cyanobacteria are also known as blue green algae and along with Prochlorococcus are responsible for a large part of the carbon fixation that occurs in marine environments. Synechococcus have a broader distribution in the ocean and are less abundant in oligotrophic (low nutrient) regions. These organism utilize photosystem I and II to capture light energy. They are highly adapted to marine environments and some strains have evolved unique motility systems in order to propel themselves towards areas that contain nitrogenous compounds. An obligate photoautotroph, it has been studied extensively by an international research community with respect to acquisition of organic carbon, transport and regulation of nitrogen compounds, adaptation to nutrient stresses, and reponse to light intensity.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_006576:24232502423250244635923110Synechococcus elongatus PCC 6301, complete genome036280BLASTN svgBLASTP svg
NC_019745:3217552*3217552324009922548Gloeocapsa sp. PCC 7428, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014733:1073540*1073540110013626597Methylovorus sp. MP688 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008536:54210365421036544451623481Solibacter usitatus Ellin6076, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_012660:1579204*1579204162109241889Pseudomonas fluorescens SBW25 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg