Pre_GI: BLASTN Hits

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Query: NC_007604:168176 Synechococcus elongatus PCC 7942, complete genome

Start: 168176, End: 189258, Length: 21083

Host Lineage: Synechococcus elongatus; Synechococcus; Synechococcaceae; Chroococcales; Cyanobacteria; Bacteria

General Information: This strain is a freshwater organism and is extensively studied due to its circadian clock which controls the expression of upwards of 800 genes during a 24 hour period. These unicellular cyanobacteria are also known as blue green algae and along with Prochlorococcus are responsible for a large part of the carbon fixation that occurs in marine environments. Synechococcus have a broader distribution in the ocean and are less abundant in oligotrophic (low nutrient) regions. These organism utilize photosystem I and II to capture light energy. They are highly adapted to marine environments and some strains have evolved unique motility systems in order to propel themselves towards areas that contain nitrogenous compounds. An obligate photoautotroph, it has been studied extensively by an international research community with respect to acquisition of organic carbon, transport and regulation of nitrogen compounds, adaptation to nutrient stresses, and reponse to light intensity.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_006576:14354221435422145633520914Synechococcus elongatus PCC 6301, complete genome034230BLASTN svgBLASTP svg
NC_007948:3541987*3541987356359921613Polaromonas sp. JS666, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007493:1672163*1672163171910246940Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence7e-1073.8BLASTN svgBLASTP svg
NC_000911:963259632511953223208Synechocystis sp. PCC 6803, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_013173:1671288*1671288168957118284Desulfomicrobium baculatum DSM 4028, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_020054:4625895*4625895466399338099Fibrella aestuarina BUZ 2 drat genome2e-0661.9BLASTN svgBLASTP svg
NC_008781:21088932108893212953620644Polaromonas naphthalenivorans CJ2, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_008054:24518424518426815122968Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete2e-0661.9BLASTN svgBLASTP svg
NC_008347:1636660*1636660166438627727Maricaulis maris MCS10, complete genome1e-0560BLASTN svgBLASTP svg