Query: NC_007333:681924 Thermobifida fusca YX, complete genome
Start: 681924, End: 704182, Length: 22259
Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria
General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_015312:1893945* | 1893945 | 1913392 | 19448 | Pseudonocardia dioxanivorans CB1190 chromosome, complete genome | 6e-32 | 147 | BLASTN svg | BLASTP svg |
NC_013595:8898533 | 8898533 | 8918619 | 20087 | Streptosporangium roseum DSM 43021, complete genome | 5e-20 | 107 | BLASTN svg | BLASTP svg |
NC_014215:1190447* | 1190447 | 1214099 | 23653 | Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, | 2e-19 | 105 | BLASTN svg | BLASTP svg |
NC_013124:1606879* | 1606879 | 1631807 | 24929 | Acidimicrobium ferrooxidans DSM 10331, complete genome | 5e-17 | 97.6 | BLASTN svg | BLASTP svg |
NC_006087:1483761* | 1483761 | 1507392 | 23632 | Leifsonia xyli subsp. xyli str. CTCB07, complete genome | 1e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_008313:886248 | 886248 | 917869 | 31622 | Ralstonia eutropha H16 chromosome 1, complete sequence | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_014831:329983* | 329983 | 357313 | 27331 | Thermaerobacter marianensis DSM 12885 chromosome, complete genome | 7e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_013715:699400* | 699400 | 722099 | 22700 | Rothia mucilaginosa DY-18, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_014958:1268559* | 1268559 | 1293225 | 24667 | Deinococcus maricopensis DSM 21211 chromosome, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_015387:942974 | 942974 | 970620 | 27647 | Marinithermus hydrothermalis DSM 14884 chromosome, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_014836:497350* | 497350 | 524635 | 27286 | Desulfurispirillum indicum S5 chromosome, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_013741:424278* | 424278 | 443578 | 19301 | Archaeoglobus profundus DSM 5631, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_007963:2512478* | 2512478 | 2533708 | 21231 | Chromohalobacter salexigens DSM 3043, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |