Pre_GI: BLASTN Hits

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Query: NC_007333:2093167 Thermobifida fusca YX, complete genome

Start: 2093167, End: 2117099, Length: 23933

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_018750:13900291390029140825618228Streptomyces venezuelae ATCC 10712, complete genome0644BLASTN svgBLASTP svg
NC_003155:79790507979050800260423555Streptomyces avermitilis MA-4680, complete genome2e-176626BLASTN svgBLASTP svg
NC_003888:17511791751179177155020372Streptomyces coelicolor A3(2), complete genome3e-123450BLASTN svgBLASTP svg
NC_020133:2886541*2886541291380027260Mycobacterium liflandii 128FXT, complete genome4e-101377BLASTN svgBLASTP svg
NC_008611:2615204*2615204263604620843Mycobacterium ulcerans Agy99, complete genome4e-101377BLASTN svgBLASTP svg
NC_013093:24715742471574251123439661Actinosynnema mirum DSM 43827, complete genome1e-33153BLASTN svgBLASTP svg
NC_010617:26398526398528723123247Kocuria rhizophila DC2201, complete genome3e-18101BLASTN svgBLASTP svg
NC_007333:32445723244572326976825197Thermobifida fusca YX, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_020302:30144833014483304598931507Corynebacterium halotolerans YIM 70093 = DSM 44683, complete1e-0869.9BLASTN svgBLASTP svg
NC_012856:2266187*2266187228576319577Ralstonia pickettii 12D chromosome 1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_006361:2225072*2225072225678031709Nocardia farcinica IFM 10152, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_008596:40432134043213408138238170Mycobacterium smegmatis str. MC2 155, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_006361:30477883047788307176223975Nocardia farcinica IFM 10152, complete genome3e-0661.9BLASTN svgBLASTP svg