Pre_GI: BLASTN Hits

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Query: NC_004578:3921199 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 3921199, End: 3944215, Length: 23017

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_004578:4708220*4708220473152123302Pseudomonas syringae pv. tomato str. DC3000, complete genome9e-105389BLASTN svgBLASTP svg
NC_007492:38012373801237381978618550Pseudomonas fluorescens PfO-1, complete genome7e-87329BLASTN svgBLASTP svg
NC_005773:1851116*1851116187559924484Pseudomonas syringae pv. phaseolicola 1448A, complete genome3e-55224BLASTN svgBLASTP svg
NC_015424:35207833520783357390853126Aeromonas veronii B565 chromosome, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_010725:5491491*5491491552462633136Methylobacterium populi BJ001, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_012559:13019881301988132559923612Laribacter hongkongensis HLHK9, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_010814:90319990319992459921401Geobacter lovleyi SZ, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_007005:5500196*5500196552713626941Pseudomonas syringae pv. syringae B728a, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_014541:29785002978500299617417675Ferrimonas balearica DSM 9799 chromosome, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_015410:2505168*2505168253404528878Pseudomonas mendocina NK-01 chromosome, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_020209:2119845*2119845214457424730Pseudomonas poae RE*1-1-14, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_015424:1603000*1603000163382230823Aeromonas veronii B565 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_009439:860571*86057188549124921Pseudomonas mendocina ymp, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_008577:41833614183361420632622966Shewanella sp. ANA-3 chromosome 1, complete sequence3e-1281.8BLASTN svgBLASTP svg
NC_008577:14896431489643151651426872Shewanella sp. ANA-3 chromosome 1, complete sequence3e-1281.8BLASTN svgBLASTP svg
NC_008570:23650023650025959923100Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_015733:26583372658337270338145045Pseudomonas putida S16 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_020209:19495001949500197652927030Pseudomonas poae RE*1-1-14, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_012660:52423925242392526802925638Pseudomonas fluorescens SBW25 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_010501:25118872511887254627834392Pseudomonas putida W619, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_007519:3240864*3240864326641325550Desulfovibrio alaskensis G20 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_002939:1480474*1480474150560725134Geobacter sulfurreducens PCA, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_014483:13765001376500139831321814Paenibacillus polymyxa E681 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_016002:1326500*1326500135490028401Pseudogulbenkiania sp. NH8B, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_005773:32535753253575328174728173Pseudomonas syringae pv. phaseolicola 1448A, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_008570:1852286*1852286187535523070Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_010002:37853133785313380809922787Delftia acidovorans SPH-1, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_012660:1579204*1579204162109241889Pseudomonas fluorescens SBW25 chromosome, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_013512:126915*12691515204625132Sulfurospirillum deleyianum DSM 6946, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_015566:2039431*2039431206952030090Serratia sp. AS12 chromosome, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_020209:45495634549563457659927037Pseudomonas poae RE*1-1-14, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_014973:26936722693672271365719986Geobacter sp. M18 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_009092:43376174337617437380536189Shewanella loihica PV-4, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007519:27730002773000280551732518Desulfovibrio alaskensis G20 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013956:44900004490000451370923710Pantoea ananatis LMG 20103 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014500:3023762*3023762306170037939Dickeya dadantii 3937 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_004578:38173303817330384200124672Pseudomonas syringae pv. tomato str. DC3000, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_007492:33328393332839335417921341Pseudomonas fluorescens PfO-1, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_009092:15043631504363158010375741Shewanella loihica PV-4, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_013851:3142182*3142182316259920418Allochromatium vinosum DSM 180 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_013959:2449315*2449315247282523511Sideroxydans lithotrophicus ES-1 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_003155:64445006444500646671722218Streptomyces avermitilis MA-4680, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_004578:56237835623783565173727955Pseudomonas syringae pv. tomato str. DC3000, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007005:10362431036243106363927397Pseudomonas syringae pv. syringae B728a, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007005:44113884411388444643035043Pseudomonas syringae pv. syringae B728a, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007005:51543175154317518283828522Pseudomonas syringae pv. syringae B728a, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008570:3083850*3083850310907525226Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013282:37811493781149380484323695Cronobacter turicensis, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014837:2709813*2709813273364723835Pantoea sp. At-9b chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015563:3786192*3786192382040734216Delftia sp. Cs1-4 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015588:18475001847500187818330684Isoptericola variabilis 225 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_012660:26849812684981271787932899Pseudomonas fluorescens SBW25 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_010172:798923*79892388030381381Methylobacterium extorquens PA1, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_007651:2639553*2639553269172452172Burkholderia thailandensis E264 chromosome I, complete sequence7e-0763.9BLASTN svgBLASTP svg
NC_007005:2686551*2686551274062754077Pseudomonas syringae pv. syringae B728a, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_012660:57932005793200583260939410Pseudomonas fluorescens SBW25 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_013714:2350749*2350749237219321445Bifidobacterium dentium Bd1, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014840:20572320572326669960977Pantoea sp. At-9b plasmid pPAT9B03, complete sequence7e-0763.9BLASTN svgBLASTP svg
NC_015573:64980064980067054820749Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_019973:61024426102442613434331902Mesorhizobium australicum WSM2073, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_020211:35356223535622355884723226Serratia marcescens WW4, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_007005:49927304992730502132828599Pseudomonas syringae pv. syringae B728a, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007626:35222653522265361842896164Magnetospirillum magneticum AMB-1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008740:3602367*3602367362072718361Marinobacter aquaeolei VT8, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010002:33997703399770341841218643Delftia acidovorans SPH-1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_011883:2680380*2680380271559935220Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,3e-0661.9BLASTN svgBLASTP svg
NC_012660:21433762143376220316659791Pseudomonas fluorescens SBW25 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014220:1269870*1269870128997920110Syntrophothermus lipocalidus DSM 12680 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015437:76757276757279017322602Selenomonas sputigena ATCC 35185 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015563:4093650*4093650411960125952Delftia sp. Cs1-4 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_005773:26417152641715266373322019Pseudomonas syringae pv. phaseolicola 1448A, complete genome3e-0661.9BLASTN svgBLASTP svg