Query: NC_004547:611178 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
Start: 611178, End: 634493, Length: 23316
Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria
General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_013421:701005 | 701005 | 751744 | 50740 | Pectobacterium wasabiae WPP163, complete genome | 0 | 1015 | BLASTN svg | BLASTP svg |
NC_015566:316340 | 316340 | 339981 | 23642 | Serratia sp. AS12 chromosome, complete genome | 2e-28 | 135 | BLASTN svg | BLASTP svg |
NC_009832:4521585 | 4521585 | 4551124 | 29540 | Serratia proteamaculans 568, complete genome | 5e-23 | 117 | BLASTN svg | BLASTP svg |
NC_014228:3534378 | 3534378 | 3556044 | 21667 | Xenorhabdus nematophila ATCC 19061, complete genome | 8e-16 | 93.7 | BLASTN svg | BLASTP svg |
NC_013716:3512950* | 3512950 | 3559553 | 46604 | Citrobacter rodentium ICC168, complete genome | 5e-14 | 87.7 | BLASTN svg | BLASTP svg |
NC_012880:3529017* | 3529017 | 3565824 | 36808 | Dickeya dadantii Ech703, complete genome | 5e-14 | 87.7 | BLASTN svg | BLASTP svg |
NC_020181:3328844 | 3328844 | 3359099 | 30256 | Enterobacter aerogenes EA1509E, complete genome | 7e-13 | 83.8 | BLASTN svg | BLASTP svg |
NC_014532:3555550 | 3555550 | 3580123 | 24574 | Halomonas elongata DSM 2581, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_015567:313035 | 313035 | 336283 | 23249 | Serratia sp. AS9 chromosome, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_009832:358291 | 358291 | 382099 | 23809 | Serratia proteamaculans 568, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_007005:1636875 | 1636875 | 1679814 | 42940 | Pseudomonas syringae pv. syringae B728a, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_004578:934867 | 934867 | 964069 | 29203 | Pseudomonas syringae pv. tomato str. DC3000, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_010170:1498253* | 1498253 | 1546381 | 48129 | Bordetella petrii, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_014228:3391500 | 3391500 | 3428345 | 36846 | Xenorhabdus nematophila ATCC 19061, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |