Pre_GI: BLASTN Hits

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Query: NC_003888:8569962 Streptomyces coelicolor A3(2), complete genome

Start: 8569962, End: 8588099, Length: 18138

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003888:85945008594500861384119342Streptomyces coelicolor A3(2), complete genome4e-63250BLASTN svgBLASTP svg
NC_003888:7028165*7028165706572937565Streptomyces coelicolor A3(2), complete genome4e-63250BLASTN svgBLASTP svg
NC_010572:84085008408500845070242203Streptomyces griseus subsp. griseus NBRC 13350, complete genome5e-35157BLASTN svgBLASTP svg
NC_010572:820008200014493162932Streptomyces griseus subsp. griseus NBRC 13350, complete genome5e-35157BLASTN svgBLASTP svg
NC_018524:46567864656786467595719172Nocardiopsis alba ATCC BAA-2165 chromosome, complete genome2e-34155BLASTN svgBLASTP svg
NC_003888:56225562259004333819Streptomyces coelicolor A3(2), complete genome6e-1693.7BLASTN svgBLASTP svg
NC_013595:18512261851226187265321428Streptosporangium roseum DSM 43021, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_013131:3473843*3473843349585522013Catenulispora acidiphila DSM 44928, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_013595:73028887302888732647023583Streptosporangium roseum DSM 43021, complete genome2e-0661.9BLASTN svgBLASTP svg