Pre_GI: BLASTP Hits

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Query: NC_017328:2090679:2109453 Shigella flexneri 2002017 chromosome, complete genome

Start: 2109453, End: 2110949, Length: 1497

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004741:2009769:2030527203052720320231497Shigella flexneri 2a str. 2457T, complete genomeputative sheath protein0944
NC_004337:2035945:2055194205519420566901497Shigella flexneri 2a str. 301, complete genomeputative sheath protein0944
NC_007946:2894793:2915889291588929173851497Escherichia coli UTI89, complete genomebacteriophage V tail sheath protein0813
NC_010102:1779707:1809933180993318114291497Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein0776
NC_011094:2115750:2137330213733021388261497Salmonella enterica subsp. enterica serovar Schwarzengrund strbacteriophage Mu tail sheath protein0771
NC_011294:2009388:2030365203036520318611497Salmonella enterica subsp. enterica serovar Enteritidis strphage tail sheath protein0770
NC_011205:2137696:2158671215867121601671497Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853bacteriophage Mu tail sheath protein0766
NC_009436:2776410:2797574279757427990671494Enterobacter sp. 638, complete genomebacteriophage Mu tail sheath family protein0681
NC_007712:1182518:1202306120230612038051500Sodalis glossinidius str. 'morsitans', complete genomephage tail sheath protein2e-171602
NC_020260:1615135:1644594164459416464351842Cronobacter sakazakii Sp291, complete genomemu-like prophage FluMu tail sheath protein1e-138493
NC_002937:2933000:2958791295879129602541464Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completetail sheath protein, putative1e-75284
NC_014228:3282500:3303601330360133050731473Xenorhabdus nematophila ATCC 19061, complete genomeputative tail sheath protein3e-75282
NC_000907:1568867:1581412158141215828751464Haemophilus influenzae Rd KW20, complete genomesheath protein gpL3e-72273
NC_020126:2381380:2381380238138023828431464Myxococcus stipitatus DSM 14675, complete genomebacteriophage tail sheath protein7e-62238
NC_008014:112000:1252781252781266931416Lawsonia intracellularis PHE/MN1-00 plasmid 3, complete sequenceprobable phage sheath protein1e-31137
NC_002927:3827211:3845132384513238465591428Bordetella bronchiseptica RB50, complete genomeputative phage tail sheath protein4e-31136
NC_018604:305957:3363173363173377891473Brachyspira pilosicoli WesB complete genomehypothetical protein8e-28125
NC_012721:2694829:2713196271319627146741479Burkholderia glumae BGR1 chromosome 2, complete genomeTail sheath protein, putative2e-27124
NC_017243:58000:8329883298847941497Brachyspira intermedia PWS/A chromosome, complete genomehypothetical protein3e-24113
NC_011365:592256:6179236179236190621140Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeMu-like protein prophage tail sheath protein gpL-like protein6e-1892.8