Pre_GI: BLASTP Hits

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Query: NC_017328:1075535:1085433 Shigella flexneri 2002017 chromosome, complete genome

Start: 1085433, End: 1085738, Length: 306

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013361:1284579:129547712954771295785309Escherichia coli O26:H11 str. 11368 chromosome, complete genomeregulatory protein2e-28124
NC_013364:1257801:126870912687091269005297Escherichia coli O111:H- str. 11128, complete genomeputative regulatory protein1e-27122
NC_013008:1307392:131750713175071317803297Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeprophage regulatory protein1e-27122
NC_002655:1053082:106311310631131063409297Escherichia coli O157:H7 EDL933, complete genomeputative prophage regulatory protein1e-27122
NC_002695:1364833:137494813749481375244297Escherichia coli O157:H7 str. Sakai, complete genomeputative regulatory protein1e-27122
NC_002655:1448605:145872014587201459016297Escherichia coli O157:H7 EDL933, complete genomeputative prophage regulatory protein1e-27122
NC_007946:1073135:108545710854571085753297Escherichia coli UTI89, complete genomepossible prophage regulatory protein3e-27120
NC_004431:1119700:113207111320711132319249Escherichia coli CFT073, complete genomeProphage CP4-57 Regulatory protein alpA9e-22102
NC_010634:1342393:135171913517191351946228Yersinia pseudotuberculosis PB1/+, complete genomephage transcriptional regulator, AlpA5e-1166.6
NC_008322:2077628:208644320864432086655213Shewanella sp. MR-7, complete genomephage transcriptional regulator, AlpA6e-1166.2
NC_012691:2476223:250031525003152500668354Tolumonas auensis DSM 9187, complete genomephage transcriptional regulator, AlpA1e-1065.1
NC_020064:3609844:362729036272903627496207Serratia marcescens FGI94, complete genomeputative transcriptional regulator3e-1063.9
NC_020260:603796:634711634711634926216Cronobacter sakazakii Sp291, complete genomephage transcriptional regulator AlpA1e-0962
NC_013446:1648556:170090317009031701070168Comamonas testosteroni CNB-2, complete genomephage transcriptional regulator, AlpA1e-0961.6
NC_009138:668000:682715682715682936222Herminiimonas arsenicoxydans, complete genomeputative prophage regulator protein5e-0959.7
NC_009659:1050532:110700311070031107224222Janthinobacterium sp. Marseille chromosome, complete genomeprophage cp4-57 regulatory protein AlpA5e-0959.7
NC_008321:1993541:200355220035522003767216Shewanella sp. MR-4, complete genomephage transcriptional regulator, AlpA8e-0959.3
NC_016147:2337244:235914423591442359449306Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeputative regulatory protein3e-0857.4
NC_012759:2633949:264247826424782642690213Escherichia coli BW2952 chromosome, complete genomeCP4-57 prophage; DNA-binding transcriptional activator3e-0857.4
AC_000091:2747520:275730027573002757512213Escherichia coli W3110 DNA, complete genomeDNA-binding transcriptional activator3e-0857.4
NC_000913:2746886:275666627566662756878213Escherichia coli K12, complete genomeCP4-57 prophage; DNA-binding transcriptional activator3e-0857.4
NC_010473:2839902:284843128484312848643213Escherichia coli str. K-12 substr. DH10B, complete genomeCP4-57 prophage; DNA-binding transcriptional activator3e-0857.4
NC_017506:1100679:111453411145341114761228Marinobacter adhaerens HP15 chromosome, complete genomeprophage CP4-57 regulatory3e-0857
NC_010676:2793237:279827727982772798510234Burkholderia phytofirmans PsJN chromosome 2, complete sequencephage transcriptional regulator, AlpA4e-0856.6
NC_010622:249625:279209279209279430222Burkholderia phymatum STM815 chromosome 1, complete sequencephage transcriptional regulator, AlpA4e-0753.5
NC_014931:2929695:294409229440922944325234Variovorax paradoxus EPS chromosome, complete genomephage transcriptional regulator, AlpA5e-0753.1
NC_018012:598724:621237621237621485249Thiocystis violascens DSM 198 chromosome, complete genome7e-0752.8
NC_015554:4648919:466519546651954665377183Alteromonas sp. SN2 chromosome, complete genomephage transcriptional regulator, AlpA7e-0752.8
NC_007404:2743877:275254427525442752756213Thiobacillus denitrificans ATCC 25259, complete genomePossible Transcriptional Regulator5e-0650.1
NC_020304:752012:772470772470772679210Desulfocapsa sulfexigens DSM 10523, complete genomeputative transcriptional regulator8e-0649.3