Pre_GI: BLASTP Hits

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Query: NC_017249:60216:80046 Bradyrhizobium japonicum USDA 6, complete genome

Start: 80046, End: 81326, Length: 1281

Host Lineage: Bradyrhizobium japonicum; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This nitrogen-fixing bacterium develops a symbiotic relationship with the soybean plant Glycine max and is related to other N2-fixing Rhizobia which are symbiotic with legumes. The bacterium establishes itself in a root nodule which provides a protective environment for the organism to live while the bacterium provides the plant cell with nitrogen. This is an agriculturally important symbiotic relationship as it obviates the need for expensive and environmentally damaging fertilizer.Genes that code for proteins involved in root nodulation are carried on the chromosome. The production of the nodulation signal, lipochitin, is directed by genes which are turned on in the presence of plant flavonoid compounds. The bacteria are endocytosed into a cortical cell, and are enclosed within a membrane bound organelle termed the symbiosome.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004463:60225:7851178511798031293Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein0650
NC_015711:8852850:8869566886956688708461281Myxococcus fulvus HW-1 chromosome, complete genomeECF subfamily RNA polymerase sigma factor6e-115414
NC_014623:10036628:1005204710052047100533331287Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeRNA polymerase sigma-70 factor4e-104378
NC_016591:202342:2164152164152176861272Burkholderia sp. YI23 plasmid byi_2p, complete sequencehypothetical protein5e-98358
NC_008699:2260606:2262345226234522636131269Nocardioides sp. JS614, complete genomesigma-70 region 2 domain protein2e-91336
NC_013159:1885985:1890369189036918916551287Saccharomonospora viridis DSM 43017, complete genomeRNA polymerase, sigma subunit, ECF family4e-80298
NC_018681:441014:4615964615964628731278Nocardia brasiliensis ATCC 700358 chromosome, complete genomesigma factor2e-70266
NC_014391:6640327:6640327664032766415471221Micromonospora aurantiaca ATCC 27029 chromosome, complete genomesigma-70 family RNA polymerase3e-69262
NC_017093:6461486:6481348648134864826281281Actinoplanes missouriensis 431, complete genomeputative RNA polymerase ECF-subfamily sigma factor6e-67254
NC_008027:4280000:4283709428370942849471239Pseudomonas entomophila L48, complete genomeRNA polymerase sigma-70 factor, ECF subfamily2e-65249
NC_014815:2639339:2649726264972626509461221Micromonospora sp. L5 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ecf subfamily3e-65249
NC_010397:4533089:4535518453551845367441227Mycobacterium abscessus chromosome Chromosome, complete sequenceRNA polymerase sigma-70 factor, ECF subfamily1e-64247
NC_018750:4728870:4732837473283747340781242Streptomyces venezuelae ATCC 10712, complete genomeRNA polymerase sigma-70 factor, ECF subfamily1e-63243
NC_014623:8930235:8943502894350289447731272Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeECF subfamily RNA polymerase sigma-70 factor3e-63243
NC_013889:1623697:1623697162369716250131317Thioalkalivibrio sp. K90mix chromosome, complete genomeputative RNA polymerase, sigma-24 subunit, ECF subfamily8e-63241
NC_019673:189487:2035772035772047401164Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein5e-61235
NC_017955:3731480:3820291382029138215471257Modestobacter marinus, complete genomeRNA polymerase sigma factor2e-60233
NC_019902:3644000:3645711364571136470721362Thioalkalivibrio nitratireducens DSM 14787, complete genomeRNA polymerase sigma-70 factor, ECF subfamily4e-60232
NC_019673:1384795:1390302139030213915101209Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein4e-60232
NC_015434:5434500:5449124544912454503471224Verrucosispora maris AB-18-032 chromosome, complete genomeputative RNA polymerase, sigma-24 subunit, ECF subfamily protein2e-59229
NC_018681:867230:8660168660168672331218Nocardia brasiliensis ATCC 700358 chromosome, complete genomeRNA polymerase ECF-type sigma factor4e-59229
NC_009380:3043140:3057393305739330587031311Salinispora tropica CNB-440 chromosome, complete genomesigma-70 region 4 domain-containing protein7e-57221
NC_013729:4835452:4850986485098648522211236Kribbella flavida DSM 17836, complete genomeputative RNA polymerase, sigma-24 subunit, ECF subfamily3e-55216
NC_019904:5130458:5137186513718651384301245Echinicola vietnamensis DSM 17526 chromosome, complete genomeRNA polymerase sigma factor containing a TPR repeat domain8e-45181
NC_014210:2277971:2296055229605522973741320Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,putative RNA polymerase, sigma-24 subunit, ECF subfamily2e-43176
NC_014391:3596812:3596812359681235978461035Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeSigma-70 region 4 type 27e-42171
NC_008255:2839147:2846183284618328474331251Cytophaga hutchinsonii ATCC 33406, complete genomeprobable sigma-70 factor, ECF subfamily8e-41168
NC_017030:158947:1621281621281633691242Corallococcus coralloides DSM 2259 chromosome, complete genomeRNA polymerase sigma-70 factor2C ECF subfamily3e-40166
NC_006361:1547034:1565536156553615667681233Nocardia farcinica IFM 10152, complete genomeputative sigma factor1e-28127
NC_018524:4988810:501475850147585015384627Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomesigma-70 region 2 family protein5e-0755.8