Pre_GI: BLASTP Hits

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Query: NC_017179:1683199:1701289 Clostridium difficile BI1, complete genome

Start: 1701289, End: 1701741, Length: 453

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013315:1679000:169327416932741693726453Clostridium difficile CD196 chromosome, complete genomehypothetical protein5e-83305
NC_011837:1935294:195039419503941951242849Clostridium kluyveri NBRC 12016, complete genomehypothetical protein6e-1166.2
NC_013173:953633:978862978862979515654Desulfomicrobium baculatum DSM 4028, complete genomeprophage antirepressor1e-1065.1
NC_007519:1782067:179635917963591796913555Desulfovibrio alaskensis G20 chromosome, complete genomeprophage antirepressor-like7e-0959.7
NC_016799:167362:181688181688182506819Corynebacterium diphtheriae 31A chromosome, complete genomeputative anti-repressor protein8e-0959.3
NC_007519:2773000:278776727877672788360594Desulfovibrio alaskensis G20 chromosome, complete genomeprophage antirepressor-like9e-0959.3
NC_015052:1030708:104657610465761047355780Bifidobacterium longum subsp. infantis 157F, complete genomephage antirepressor2e-0858.2
NC_012121:474144:477436477436478203768Staphylococcus carnosus subsp. carnosus TM300, complete genomeputative antirepressor, phage associated2e-0857.8
NC_007434:1712000:174098017409801741699720Burkholderia pseudomallei 1710b chromosome I, complete sequenceBRO family, N-terminal domain protein7e-0856.2
NC_010655:1606901:163592716359271636721795Akkermansia muciniphila ATCC BAA-835, complete genomeprophage antirepressor1e-0755.8
NC_012559:1685812:169887816988781699522645Laribacter hongkongensis HLHK9, complete genomePhage associated-antirepressor5e-0753.5
NC_017986:5509569:552276155227615523573813Pseudomonas putida ND6 chromosome, complete genomeBRO domain protein1e-0652
NC_007298:3764048:377102537710253771624600Dechloromonas aromatica RCB, complete genomeBRO, N-terminal1e-0652
NC_009782:920272:922882922882923661780Staphylococcus aureus subsp. aureus Mu3, complete genomehypothetical protein2e-0651.2
NC_002758:918827:921437921437922216780Staphylococcus aureus subsp. aureus Mu50, complete genomesimilar to anti-repressor2e-0651.2
NC_014554:1821320:183285618328561833608753Lactobacillus plantarum subsp. plantarum ST-III chromosome,hypothetical protein6e-0649.7