Pre_GI: BLASTP Hits

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Query: NC_017179:1683199:1684408 Clostridium difficile BI1, complete genome

Start: 1684408, End: 1685115, Length: 708

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016023:875416:880847880847881599753Bacillus coagulans 36D1 chromosome, complete genomeHIRAN domain-containing protein3e-28125
NC_016593:3402205:341025234102523410998747Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completehypothetical protein4e-27121
NC_006510:3321426:333137433313743332120747Geobacillus kaustophilus HTA426, complete genomehypothetical protein4e-27121
NC_014915:2427000:245023024502302450976747Geobacillus sp. Y412MC52 chromosome, complete genomeHIRAN domain protein3e-1892
NC_013411:284461:288512288512289258747Geobacillus sp. Y412MC61, complete genomeHIRAN3e-1892
NC_014973:5099543:511829351182935119042750Geobacter sp. M18 chromosome, complete genomehypothetical protein1e-1273.2
NC_016943:1956719:196619819661981966956759Blastococcus saxobsidens DD2, complete genomehypothetical protein2e-1169.7