Pre_GI: BLASTP Hits

Some Help

Query: NC_016822:2940000:2953032 Shigella sonnei 53G, complete genome

Start: 2953032, End: 2954306, Length: 1275

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007941:11319:2516425164264381275Escherichia coli UTI89 plasmid pUTI89, complete sequenceenterotoxin TieB protein0875
NC_014837:387868:4119974119974130521056Pantoea sp. At-9b chromosome, complete genomeputative receptor1e-25118
NC_009436:1141376:1155590115559011566751086Enterobacter sp. 638, complete genomeperiplasmic protein4e-25116
NC_007946:1586656:1592749159274915938101062Escherichia coli UTI89, complete genomehypothetical protein YncE precursor5e-21102
NC_008563:1577879:1581668158166815827291062Escherichia coli APEC O1, complete genomehypothetical protein5e-21102
NC_011742:1528668:1534761153476115358221062Escherichia coli S88 chromosome, complete genomehypothetical protein5e-21102
NC_011751:1714131:1716475171647517175361062Escherichia coli UMN026 chromosome, complete genomehypothetical protein1e-20100
NC_011740:1494796:1497140149714014982011062Escherichia fergusonii ATCC 35469, complete genomehypothetical protein2e-20100
NC_010473:1607646:1611926161192616129871062Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein5e-2099.4
AC_000091:1521976:1525021152502115260821062Escherichia coli W3110 DNA, complete genomehypothetical protein5e-2099.4
NC_000913:1517051:1521331152133115223921062Escherichia coli K12, complete genomehypothetical protein5e-2099.4
NC_012759:1409086:1413390141339014144511062Escherichia coli BW2952 chromosome, complete genomehypothetical protein5e-2099.4
NC_011745:1581907:1585932158593215869931062Escherichia coli ED1a chromosome, complete genomehypothetical protein5e-2099.4
CP002797:1591000:1591081159108115921421062Escherichia coli NA114, complete genomeHypothetical protein9e-2098.6
NC_015947:444466:4577764577764589211146Burkholderia sp. JV3 chromosome, complete genomehypothetical protein3e-1893.2
NC_010943:493002:5142665142665154861221Stenotrophomonas maltophilia K279a, complete genomehypothetical protein7e-1892
NC_015458:1692401:1705533170553317066871155Pusillimonas sp. T7-7 chromosome, complete genomehypothetical protein1e-1790.9