Pre_GI: BLASTP Hits

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Query: NC_016822:267758:272744 Shigella sonnei 53G, complete genome

Start: 272744, End: 272887, Length: 144

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013941:261094:263806263806263949144Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein3e-2097.1
NC_011741:256932:259643259643259786144Escherichia coli IAI1 chromosome, complete genomehypothetical protein3e-2097.1
CU928160:256932:259643259643259786144Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein3e-2097.1
NC_013008:261226:263854263854263997144Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein7e-2095.9
NC_011353:261220:263848263848263991144Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein7e-2095.9
NC_002655:261236:263864263864264007144Escherichia coli O157:H7 EDL933, complete genomehypothetical protein7e-2095.9