Pre_GI: BLASTP Hits

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Query: NC_016822:246715:257831 Shigella sonnei 53G, complete genome

Start: 257831, End: 259243, Length: 1413

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016902:3863932:3864680386468038660921413Escherichia coli KO11FL chromosome, complete genometype VI secretion-associated protein0919
CP002516:3863932:3864680386468038660921413Escherichia coli KO11, complete genometype VI secretion-associated protein, VC_A0119 family0919
CP002185:234719:2458112458112472231413Escherichia coli W, complete genomeImpA domain-containing protein0919
NC_011205:1186097:1211580121158012129921413Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853ImpA domain-containing protein0692
NC_011149:1077589:1098898109889811003101413Salmonella enterica subsp. enterica serovar Agona str. SL483,type VI secretion-associated protein, family0682
NC_011274:1094379:1119872111987211211671296Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein1e-176620
NC_005126:349658:3859733859733874061434Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein1e-110400
NC_013892:274297:2834992834992849351437Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein7e-111400
NC_014228:4331327:4341899434189943433411443Xenorhabdus nematophila ATCC 19061, complete genomeConserved hypothetical protein with ImpA domain(probable component of SST VI cluster)8e-110397
NC_010465:429095:4331814331814345691389Yersinia pseudotuberculosis YPIII, complete genometype VI secretion-associated protein, VC_A0119 family8e-110397
NC_003143:4006884:4010961401096140123581398Yersinia pestis CO92, complete genomehypothetical protein2e-109396
NC_010634:4234932:4250202425020242515901389Yersinia pseudotuberculosis PB1/+, complete genometype VI secretion-associated protein1e-109396
NC_006155:4302826:4319105431910543204931389Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein1e-109396
NC_009381:222735:2268122268122282001389Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein1e-109396
NC_009708:372422:3765083765083778961389Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeImpA domain-containing protein1e-109396
NC_014029:3958811:3962897396289739642851389Yersinia pestis Z176003 chromosome, complete genomehypothetical protein1e-109396
NC_017154:3898925:3903011390301139043991389Yersinia pestis D106004 chromosome, complete genomehypothetical protein1e-109396
NC_017168:1631052:1635138163513816365261389Yersinia pestis A1122 chromosome, complete genomehypothetical protein1e-109396
NC_017265:4265659:4281882428188242832701389Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein1e-109396
NC_012962:293976:3057363057363070461311Photorhabdus asymbiotica, complete genomehypothetical protein2e-102373
NC_015968:4117835:4139595413959541409951401Enterobacter asburiae LF7a chromosome, complete genometype VI secretion-associated protein2e-77290
NC_008740:4109000:4129370412937041308181449Marinobacter aquaeolei VT8, complete genomeImpA domain protein6e-52205
NC_005126:349658:360430360430361113684Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein7e-48191
NC_012913:1832500:1847423184742318488501428Aggregatibacter aphrophilus NJ8700, complete genomehypothetical protein4e-1996.3
NC_007348:2011957:2029244202924420308181575Ralstonia eutropha JMP134 chromosome 2, complete sequenceImpA, N-terminal4e-1273.2
NC_012962:4427000:4435406443540644370071602Photorhabdus asymbiotica, complete genomehypothetical protein2e-1170.9
NC_007517:306508:3065083065083088802373Geobacter metallireducens GS-15, complete genomeImpA-like6e-1065.9
NC_009656:3733913:3744965374496537465211557Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein2e-0964.3
NC_008563:3119284:3139452313945231410891638Escherichia coli APEC O1, complete genomehypothetical protein4e-0963.2
NC_014121:1822895:1838342183834218399401599Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completetype VI secretion system protein VasJ1e-0861.2
NC_017060:125480:1543521543521559561605Rahnella aquatilis HX2 plasmid PRA1, complete sequencetype VI secretion-associated protein4e-0756.6
NC_009436:3117661:3152243315224331546182376Enterobacter sp. 638, complete genomeImpA domain-containing protein5e-0756.2
NC_013956:4579759:4578161457816145797621602Pantoea ananatis LMG 20103 chromosome, complete genomehypothetical protein8e-0755.5
NC_010501:3575726:3578580357858035801661587Pseudomonas putida W619, complete genometype VI secretion-associated protein, VC_A0119 family1e-0654.7
NC_014118:1171411:1171411117141111729971587Burkholderia sp. CCGE1002 chromosome chromosome 2, completetype VI secretion-associated protein, VC_A0119 family3e-0653.5