Pre_GI: BLASTP Hits

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Query: NC_016822:246715:250025 Shigella sonnei 53G, complete genome

Start: 250025, End: 250810, Length: 786

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016902:3863932:387308838730883873873786Escherichia coli KO11FL chromosome, complete genomeputative aminopeptidase3e-141501
CP002185:234719:238030238030238815786Escherichia coli W, complete genomepredicted aminopeptidase3e-141501
CP002516:3863932:387308838730883873873786Escherichia coli KO11, complete genomeputative aminopeptidase3e-141501
NC_011149:1110642:112359511235951124374780Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein5e-101367
NC_011205:1227373:123740912374091238188780Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein1e-99362
NC_011740:2986514:299282429928242993612789Escherichia fergusonii ATCC 35469, complete genomeconserved hypothetical protein; putative exported protein3e-99361
NC_011294:1085447:111408111140811114860780Salmonella enterica subsp. enterica serovar Enteritidis strlipoprotein4e-99360
NC_011274:1129686:115078011507801151559780Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91lipoprotein7e-99360
NC_016831:1865681:187360518736051874384780Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative lipoprotein2e-98358
NC_009792:4017510:402574840257484026494747Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein2e-89328