Pre_GI: BLASTP Hits

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Query: NC_016822:246715:247504 Shigella sonnei 53G, complete genome

Start: 247504, End: 248226, Length: 723

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016902:3863932:387567338756733876395723Escherichia coli KO11FL chromosome, complete genometype 11 methyltransferase1e-136485
CP002516:3863932:387567338756733876395723Escherichia coli KO11, complete genomeMethyltransferase type 111e-136485
CP002185:234719:235508235508236230723Escherichia coli W, complete genomeputative S-adenosyl-L-methionine-dependent methyltransferase1e-136485
NC_011149:309556:311785311785312507723Salmonella enterica subsp. enterica serovar Agona str. SL483,putative methyltransferase5e-119426
NC_009381:1783886:182789818278981828617720Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein5e-88323
NC_008149:3251196:327523232752323275951720Yersinia pestis Nepal516, complete genomehypothetical protein5e-88323
NC_008321:2569315:258790625879062588640735Shewanella sp. MR-4, complete genomeMethyltransferase type 111e-32139
NC_009901:2915939:293374729337472934487741Shewanella pealeana ATCC 700345, complete genomeMethyltransferase type 116e-31134
NC_005085:1269787:132089913208991321663765Chromobacterium violaceum ATCC 12472, complete genomehypothetical protein8e-2097.4
NC_015856:1733500:173613517361351737001867Collimonas fungivorans Ter331 chromosome, complete genomeSAM-dependent methyltransferase5e-1891.3
NC_010531:708049:724314724314725132819Polynucleobacter necessarius STIR1, complete genomeMethyltransferase type 112e-1789.4
NC_015731:1731896:174187917418791742652774Nitrosomonas sp. Is79A3 chromosome, complete genometype 11 methyltransferase4e-1684.7
NC_014722:771483:790604790604791416813Burkholderia rhizoxinica HKI 454, complete genomemethyltransferase1e-1480.1
NC_014910:1765065:178952517895251790307783Alicycliphilus denitrificans BC chromosome, complete genomemethyltransferase type 113e-1272
NC_008313:2685531:268641326864132687144732Ralstonia eutropha H16 chromosome 1, complete sequenceMethyltransferase4e-1271.6
NC_010524:2117347:213870721387072139528822Leptothrix cholodnii SP-6, complete genomehypothetical protein2e-0963.2