Pre_GI: BLASTP Hits

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Query: NC_016822:2201388:2204065 Shigella sonnei 53G, complete genome

Start: 2204065, End: 2204247, Length: 183

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016902:1902431:192600619260061926188183Escherichia coli KO11FL chromosome, complete genomehypothetical protein1e-27121
NC_012947:1769438:180896718089671809149183Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein1e-27121
CP002516:1902431:192600619260061926188183Escherichia coli KO11, complete genomeProtein of unknown function DUF21581e-27121
NC_010498:1210145:123100012310001231182183Escherichia coli SMS-3-5, complete genomehypothetical protein1e-27121
AC_000091:2027648:203032520303252030507183Escherichia coli W3110 DNA, complete genomehypothetical protein1e-27121
NC_016810:2027311:202918820291882029406219Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein8e-22102
NC_016857:2027311:202918820291882029406219Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein8e-22102
NC_016863:2029340:203121720312172031462246Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein7e-22102
NC_015761:1970042:197192519719251972170246Salmonella bongori NCTC 12419, complete genomehypothetical protein2e-21100
NC_021066:601029:621281621281621460180Raoultella ornithinolytica B6, complete genomehypothetical protein5e-1786.7
NC_016612:5208936:520893652089365209064129Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein2e-1064.3